Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YoeB-YefM |
| Location | 3716693..3717195 | Replicon | chromosome |
| Accession | NZ_CP072801 | ||
| Organism | Thiothrix litoralis strain AS | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | J9253_RS17975 | Protein ID | WP_028489823.1 |
| Coordinates | 3716693..3716947 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | J9253_RS17980 | Protein ID | WP_028489824.1 |
| Coordinates | 3716944..3717195 (-) | Length | 84 a.a. |
Genomic Context
Location: 3715526..3716659 (1134 bp)
Type: Others
Protein ID: WP_210222237.1
Type: Others
Protein ID: WP_210222237.1
Location: 3717355..3719130 (1776 bp)
Type: Others
Protein ID: WP_210222238.1
Type: Others
Protein ID: WP_210222238.1
Location: 3713489..3714673 (1185 bp)
Type: Others
Protein ID: WP_210222236.1
Type: Others
Protein ID: WP_210222236.1
Location: 3714700..3715389 (690 bp)
Type: Others
Protein ID: WP_228291424.1
Type: Others
Protein ID: WP_228291424.1
Location: 3716693..3716947 (255 bp)
Type: Toxin
Protein ID: WP_028489823.1
Type: Toxin
Protein ID: WP_028489823.1
Location: 3716944..3717195 (252 bp)
Type: Antitoxin
Protein ID: WP_028489824.1
Type: Antitoxin
Protein ID: WP_028489824.1
Location: 3719199..3719503 (305 bp)
Type: Others
Protein ID: Protein_3568
Type: Others
Protein ID: Protein_3568
Location: 3719476..3721113 (1638 bp)
Type: Others
Protein ID: WP_228291596.1
Type: Others
Protein ID: WP_228291596.1
Location: 3721319..3722020 (702 bp)
Type: Others
Protein ID: WP_210222240.1
Type: Others
Protein ID: WP_210222240.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9253_RS17960 (J9253_17960) | 3713489..3714673 | - | 1185 | WP_210222236.1 | hypothetical protein | - |
| J9253_RS17965 (J9253_17965) | 3714700..3715389 | - | 690 | WP_228291424.1 | ABC transporter ATP-binding protein | - |
| J9253_RS17970 (J9253_17970) | 3715526..3716659 | + | 1134 | WP_210222237.1 | hypothetical protein | - |
| J9253_RS17975 (J9253_17975) | 3716693..3716947 | - | 255 | WP_028489823.1 | Txe/YoeB family addiction module toxin | Toxin |
| J9253_RS17980 (J9253_17980) | 3716944..3717195 | - | 252 | WP_028489824.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| J9253_RS17985 (J9253_17985) | 3717355..3719130 | + | 1776 | WP_210222238.1 | N-acetylglutaminylglutamine amidotransferase | - |
| J9253_RS17990 (J9253_17990) | 3719199..3719503 | - | 305 | Protein_3568 | transposase | - |
| J9253_RS17995 (J9253_17995) | 3719476..3721113 | - | 1638 | WP_228291596.1 | polysaccharide deacetylase family protein | - |
| J9253_RS18000 (J9253_18000) | 3721319..3722020 | - | 702 | WP_210222240.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10155.74 Da Isoelectric Point: 9.3464
>T198892 WP_028489823.1 NZ_CP072801:c3716947-3716693 [Thiothrix litoralis]
MRIVFSSKAWEDYLYWQQADKKILKRINELIKAISREPFEGIGKPEPLRHGLSGYWSRRINDEHRLVYKVEGEDLLIAMC
RYHY
MRIVFSSKAWEDYLYWQQADKKILKRINELIKAISREPFEGIGKPEPLRHGLSGYWSRRINDEHRLVYKVEGEDLLIAMC
RYHY
Download Length: 255 bp
>T198892 NZ_CP097046:2699847-2699990 [Enterococcus faecalis]
ATGAATGTAAGTACTAAAACCTATGAAAGGAGAGGCCTTTTGTCTATCGCAGAAGCTTTAGCTCTGATGATTAGTTTCGG
TTCTTTTATCGCAACGTTAATCTTCGGAATCCTAGAGGCTGTTAAAGAAGACAATAAAAAATAA
ATGAATGTAAGTACTAAAACCTATGAAAGGAGAGGCCTTTTGTCTATCGCAGAAGCTTTAGCTCTGATGATTAGTTTCGG
TTCTTTTATCGCAACGTTAATCTTCGGAATCCTAGAGGCTGTTAAAGAAGACAATAAAAAATAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9337.64 Da Isoelectric Point: 4.6386
>AT198892 WP_028489824.1 NZ_CP072801:c3717195-3716944 [Thiothrix litoralis]
MNAISYTAVRAELAKTMDRVCEDHEPIIITRNREQAVVMISLEDYKAMEETAYLLRSPANASRLLESIAELGRGNGQARE
LLE
MNAISYTAVRAELAKTMDRVCEDHEPIIITRNREQAVVMISLEDYKAMEETAYLLRSPANASRLLESIAELGRGNGQARE
LLE
Download Length: 252 bp
>AT198892 NZ_CP097046:c2700184-2699922 [Enterococcus faecalis]
AAATAAAAATGCCCGAGCCTCTTATTTTTCTAAGGCTCGGGCATTTTTATTGATGGTCTTTTGAGGGTCGTTGTGCTACA
ATGGTAATGAAAAGAGAGGTATGCGCCAACATACCTCTCTAGTGTAGAGCCGTTTCAGACGGTAGCGATTTTTAGTGATT
TATAAAAAATAACCGTGCTCGCTAAAGTTGACGGTTATTTTTTATTGTCTTCTTTAACAGCCTCTAGGATTCCGAAGATT
AACGTTGCGATAAAAGAACCGAA
AAATAAAAATGCCCGAGCCTCTTATTTTTCTAAGGCTCGGGCATTTTTATTGATGGTCTTTTGAGGGTCGTTGTGCTACA
ATGGTAATGAAAAGAGAGGTATGCGCCAACATACCTCTCTAGTGTAGAGCCGTTTCAGACGGTAGCGATTTTTAGTGATT
TATAAAAAATAACCGTGCTCGCTAAAGTTGACGGTTATTTTTTATTGTCTTCTTTAACAGCCTCTAGGATTCCGAAGATT
AACGTTGCGATAAAAGAACCGAA