Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1-PHD |
| Location | 694842..695488 | Replicon | chromosome |
| Accession | NZ_CP072764 | ||
| Organism | Mycobacterium tuberculosis strain CG20 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | O07783 |
| Locus tag | J8671_RS03105 | Protein ID | WP_003403122.1 |
| Coordinates | 694842..695234 (-) | Length | 131 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | G0TQ86 |
| Locus tag | J8671_RS03110 | Protein ID | WP_003403125.1 |
| Coordinates | 695231..695488 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8671_RS03090 (J8671_03090) | 690504..692030 | + | 1527 | WP_003403112.1 | virulence factor Mce family protein | - |
| J8671_RS03095 (J8671_03095) | 692093..693235 | + | 1143 | WP_003911253.1 | virulence factor Mce family protein | - |
| J8671_RS03100 (J8671_03100) | 693240..694790 | + | 1551 | WP_003403119.1 | MlaD family protein | - |
| J8671_RS03105 (J8671_03105) | 694842..695234 | - | 393 | WP_003403122.1 | type II toxin-antitoxin system toxin ribonuclease C4 | Toxin |
| J8671_RS03110 (J8671_03110) | 695231..695488 | - | 258 | WP_003403125.1 | type II toxin-antitoxin system antitoxin VapB4 | Antitoxin |
| J8671_RS03115 (J8671_03115) | 695671..696906 | - | 1236 | WP_003403128.1 | ATP-binding protein | - |
| J8671_RS03120 (J8671_03120) | 697157..697570 | - | 414 | WP_003403137.1 | type II toxin-antitoxin system VapC family toxin | - |
| J8671_RS03125 (J8671_03125) | 697567..697803 | - | 237 | WP_003403139.1 | type II toxin-antitoxin system antitoxin VapB27 | - |
| J8671_RS03130 (J8671_03130) | 697907..698413 | - | 507 | WP_003900973.1 | two component system sensor kinase HK1 | - |
| J8671_RS03135 (J8671_03135) | 698527..699057 | - | 531 | WP_003917320.1 | two component system sensor kinase HK2 | - |
| J8671_RS03140 (J8671_03140) | 699041..699736 | - | 696 | WP_003918099.1 | two-component system response regulator TcrA | - |
| J8671_RS03145 (J8671_03145) | 699859..700170 | + | 312 | WP_003403164.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 131 a.a. Molecular weight: 14080.08 Da Isoelectric Point: 4.6558
>T198569 WP_003403122.1 NZ_CP072764:c695234-694842 [Mycobacterium tuberculosis]
VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAW
ALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI
VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAW
ALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI
Download Length: 393 bp
>T198569 NZ_CP096905:c93268-92888 [Citrobacter amalonaticus]
ATGCAAACCTTATCCGCCATCCCGACGCGGAAGGCACCGTCACGCCCGACGCCCGTTGAAATCTGGCAGCAACTTCTTAC
GTATCTGTTAAAAAGACATTACGGCCTTTCGCTTAGCGACACGCAATTTTCCGATGAGAAGATTATTACGCAATATATTG
ACGCCGGTATCTCACTGTCAGATGCACTCAATTTTCTCGTTGAAAAATCTGAACTGGTGCGGATTGATCGTCCCGGTTTC
TCCATTAAGCATCAGTCCCCTTTTATCGGGGTGATTGATATTCTCCGGGCCAGACGGGCAACGGGTTTGATGCAACGTAA
CGGGTATAAAAGGATCACTCTTCTCATCGCTGGAAATGCAGCTCAGAAGCAACATTCATGA
ATGCAAACCTTATCCGCCATCCCGACGCGGAAGGCACCGTCACGCCCGACGCCCGTTGAAATCTGGCAGCAACTTCTTAC
GTATCTGTTAAAAAGACATTACGGCCTTTCGCTTAGCGACACGCAATTTTCCGATGAGAAGATTATTACGCAATATATTG
ACGCCGGTATCTCACTGTCAGATGCACTCAATTTTCTCGTTGAAAAATCTGAACTGGTGCGGATTGATCGTCCCGGTTTC
TCCATTAAGCATCAGTCCCCTTTTATCGGGGTGATTGATATTCTCCGGGCCAGACGGGCAACGGGTTTGATGCAACGTAA
CGGGTATAAAAGGATCACTCTTCTCATCGCTGGAAATGCAGCTCAGAAGCAACATTCATGA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9681.06 Da Isoelectric Point: 7.0175
>AT198569 WP_003403125.1 NZ_CP072764:c695488-695231 [Mycobacterium tuberculosis]
MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGEELRETLTQTT
DDVRW
MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGEELRETLTQTT
DDVRW
Download Length: 258 bp
>AT198569 NZ_CP096905:c93691-93326 [Citrobacter amalonaticus]
TTGTTGAATAAAACACTGCCGGCAAATCATCATATTTCTGAACCGTGGTGGGGACTGAAACGTAATATCACCCCGTGCTT
CGGTGCACGGCTGGTACAGGAAGGCAACCGGCTGCATTATCTGGCCGACCGCGCCAGCATCACCGGGACATTCACCGACG
CGGATTTGCGCCATCTCGACCAAGCGTTTCCGGCACTGCTCAAACAGCTGGAATTAATGCTGGTTTCCGGTGAGCTCAAT
CCCCGCCATCAGCACTGTGTCACGTTATATGCAAAAGGACTGACCTGTGAAGCAGATTCCCTCGGATCACATGGCTACAT
TTATACAGCAATTTATCCGACACCAGACGACAGCATAACCCGGTAA
TTGTTGAATAAAACACTGCCGGCAAATCATCATATTTCTGAACCGTGGTGGGGACTGAAACGTAATATCACCCCGTGCTT
CGGTGCACGGCTGGTACAGGAAGGCAACCGGCTGCATTATCTGGCCGACCGCGCCAGCATCACCGGGACATTCACCGACG
CGGATTTGCGCCATCTCGACCAAGCGTTTCCGGCACTGCTCAAACAGCTGGAATTAATGCTGGTTTCCGGTGAGCTCAAT
CCCCGCCATCAGCACTGTGTCACGTTATATGCAAAAGGACTGACCTGTGAAGCAGATTCCCTCGGATCACATGGCTACAT
TTATACAGCAATTTATCCGACACCAGACGACAGCATAACCCGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U4F8V4 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G0TQ86 |