Detailed information of TA system TA198462

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1239421..1239989
• Replicon: chromosome
• Accession: NZ_CP072762
• Organism: Mycobacterium tuberculosis strain CG23

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: J8672_RS05860
• Protein ID: WP_003405865.1
• Coordinates: 1239615..1239989 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: J8672_RS05855
• Protein ID: WP_003405863.1
• Coordinates: 1239421..1239618 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
J8672_RS05835 (J8672_05835)	1235462..1236100	-	639	WP_003898730.1	lipid droplet-associated protein	-
J8672_RS05840 (J8672_05840)	1236190..1237197	+	1008	WP_003405853.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
J8672_RS05845 (J8672_05845)	1237214..1238197	-	984	WP_003898731.1	hypothetical protein	-
J8672_RS05850 (J8672_05850)	1238260..1239333	+	1074	WP_003898732.1	redox-regulated ATPase YchF	-
J8672_RS05855 (J8672_05855)	1239421..1239618	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
J8672_RS05860 (J8672_05860)	1239615..1239989	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
J8672_RS05865 (J8672_05865)	1240192..1240890	+	699	WP_003898733.1	hypothetical protein	-
J8672_RS05870 (J8672_05870)	1241008..1241193	+	186	WP_003901093.1	hypothetical protein	-
J8672_RS05875 (J8672_05875)	1241120..1241395	-	276	WP_003405867.1	hypothetical protein	-
J8672_RS05880 (J8672_05880)	1241638..1241961	+	324	WP_003405871.1	putative quinol monooxygenase	-
J8672_RS05885 (J8672_05885)	1241976..1242674	-	699	WP_031646953.1	hypothetical protein	-
J8672_RS05890 (J8672_05890)	1242708..1242917	+	210	WP_003911400.1	hypothetical protein	-
J8672_RS05895 (J8672_05895)	1242869..1243639	-	771	Protein_1179	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T198462 WP_003405865.1 NZ_CP072762:1239615-1239989 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T198462 NZ_CP096847:2834288-2834701 [Mycobacterium tuberculosis variant bovis]
ATGGTGTTCTGCGTCGACACCAGCGCGTGGCATCACGCGGCGCGGCCGGAAGTTGCGCGCCGATGGTTGGCGGCCTTGTC
CGCGGACCAGATCGGCATCTGCGACCACGTGCGGTTGGAGATCCTGTACTCGGCGAACTCCGCTACCGACTACGACGCGC
TCGCCGACGAACTCGACGGCTTGGCCCGTATACCAGTCGGTGCCGAAACCTTTACGCGCGCATGCCAAGTCCAGCGTGAG
CTTGCCCACGTCGCCGGTCTGCATCACCGCAGCGTGAAGATCGCCGATCTTGTCATCGCCGCGGCGGCCGAACTTTCAGG
CACCATCGTGTGGCATTACGACGAGAACTATGACCGGGTCGCCGCCATCACCGGCCAACCTACGGAGTGGATCGTGCCGC
GCGGGACCCTTTAA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT198462 WP_003405863.1 NZ_CP072762:1239421-1239618 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT198462 NZ_CP096847:2834740-2834997 [Mycobacterium tuberculosis variant bovis]
ATGCGGACTCAGGTGACCCTGGGCAAAGAGGAGCTTGAGCTGCTCGATCGTGCCGCCAAGGCGAGTGGCGCATCGCGGTC
CGAACTCATCCGACGCGCAATTCACCGTGCCTACGGGACTGGATCCAAGCAGGAACGGCTCGCCGCGCTCGACCACAGCC
GTGGCTCGTGGCGAGGACGGGACTTCACCGGCACCGAGTATGTCGACGCCATTCGGGGCGACCTCAACGAACGACTTGCT
CGGCTCGGTCTGGCGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07