Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4050665..4050762 | Replicon | chromosome |
| Accession | NZ_CP072742 | ||
| Organism | Serratia fonticola strain R28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4050665..4050760 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4050674..4050762 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8M99_RS18520 (J8M99_18510) | 4046070..4047059 | + | 990 | WP_121607109.1 | prolyl aminopeptidase | - |
| J8M99_RS18525 (J8M99_18515) | 4047385..4047615 | - | 231 | WP_021181054.1 | DNA polymerase III subunit theta | - |
| J8M99_RS18530 (J8M99_18520) | 4048004..4048522 | + | 519 | WP_021806759.1 | non-heme ferritin | - |
| J8M99_RS18535 (J8M99_18525) | 4048845..4049228 | + | 384 | WP_024485865.1 | CopC domain-containing protein YobA | - |
| J8M99_RS18540 (J8M99_18530) | 4049232..4050113 | + | 882 | WP_218519230.1 | copper homeostasis membrane protein CopD | - |
| J8M99_RS18545 (J8M99_18535) | 4050183..4050524 | + | 342 | WP_021806756.1 | YebY family protein | - |
| - | 4050665..4050760 | + | 96 | - | - | Toxin |
| - | 4050674..4050762 | - | 89 | - | - | Antitoxin |
| J8M99_RS18550 (J8M99_18540) | 4051040..4051912 | + | 873 | WP_218519231.1 | excinuclease Cho | - |
| J8M99_RS18555 (J8M99_18545) | 4052224..4052697 | + | 474 | WP_218519232.1 | anti-virulence regulator CigR family protein | - |
| J8M99_RS18560 (J8M99_18550) | 4052918..4053340 | + | 423 | WP_021806749.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| J8M99_RS18565 (J8M99_18555) | 4053340..4054611 | + | 1272 | WP_115158014.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| J8M99_RS18570 (J8M99_18560) | 4055039..4055581 | + | 543 | WP_218519233.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4040069..4061429 | 21360 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 bp
>T198369 NZ_CP072742:4050665-4050760 [Serratia fonticola]
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
Antitoxin
Download Length: 89 bp
>AT198369 NZ_CP072742:c4050762-4050674 [Serratia fonticola]
ATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTATGCA
ATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTATGCA
