Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2257566..2257797 | Replicon | chromosome |
| Accession | NZ_CP072688 | ||
| Organism | Escherichia coli strain P4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2257694..2257796 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2257566..2257797 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8I92_RS10745 | 2254120..2254782 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J8I92_RS10750 | 2254805..2255461 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J8I92_RS10755 | 2255563..2255793 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J8I92_RS10760 | 2255932..2256306 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J8I92_RS10765 | 2256310..2257182 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| J8I92_RS10770 | 2257195..2257536 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 2257566..2257797 | - | 232 | - | - | Antitoxin |
| - | 2257694..2257796 | + | 103 | - | - | Toxin |
| J8I92_RS10775 | 2257927..2259003 | - | 1077 | WP_001189088.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| J8I92_RS10780 | 2258969..2259250 | - | 282 | WP_023234152.1 | excisionase | - |
| J8I92_RS10785 | 2259357..2259545 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2259361..2259539 | + | 179 | NuclAT_0 | - | - |
| - | 2259361..2259539 | + | 179 | NuclAT_0 | - | - |
| - | 2259361..2259539 | + | 179 | NuclAT_0 | - | - |
| - | 2259361..2259539 | + | 179 | NuclAT_0 | - | - |
| J8I92_RS10790 | 2259538..2259732 | - | 195 | WP_042047457.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| J8I92_RS10795 | 2259789..2260598 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2250155..2314625 | 64470 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T198290 NZ_CP072688:2257694-2257796 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT198290 NZ_CP072688:c2257797-2257566 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
