Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2229020..2229288 | Replicon | chromosome |
| Accession | NZ_CP072687 | ||
| Organism | Escherichia coli strain YP3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2229148..2229250 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2229020..2229288 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8I95_RS10470 | 2225574..2226236 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J8I95_RS10475 | 2226259..2226915 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J8I95_RS10480 | 2227017..2227247 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J8I95_RS10485 | 2227386..2227760 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J8I95_RS10490 | 2227764..2228636 | + | 873 | WP_000879310.1 | copper homeostasis membrane protein CopD | - |
| J8I95_RS10495 | 2228649..2228990 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 2229020..2229288 | - | 269 | - | - | Antitoxin |
| - | 2229148..2229250 | + | 103 | - | - | Toxin |
| J8I95_RS10500 | 2229385..2230041 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| J8I95_RS10505 | 2230042..2230233 | - | 192 | WP_001296140.1 | YebW family protein | - |
| J8I95_RS10510 | 2230338..2230574 | - | 237 | WP_001295499.1 | YebV family protein | - |
| J8I95_RS10515 | 2230692..2232131 | - | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T198266 NZ_CP072687:2229148-2229250 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT198266 NZ_CP072687:c2229288-2229020 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
