Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2257315..2257546 | Replicon | chromosome |
| Accession | NZ_CP072686 | ||
| Organism | Escherichia coli strain FP4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2257443..2257545 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2257315..2257546 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8I94_RS10735 | 2253869..2254531 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J8I94_RS10740 | 2254554..2255210 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J8I94_RS10745 | 2255312..2255542 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J8I94_RS10750 | 2255681..2256055 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J8I94_RS10755 | 2256059..2256931 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| J8I94_RS10760 | 2256944..2257285 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 2257315..2257546 | - | 232 | - | - | Antitoxin |
| - | 2257443..2257545 | + | 103 | - | - | Toxin |
| J8I94_RS10765 | 2257676..2258752 | - | 1077 | WP_001189088.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| J8I94_RS10770 | 2258718..2258999 | - | 282 | WP_023234152.1 | excisionase | - |
| J8I94_RS10775 | 2259106..2259294 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2259110..2259288 | + | 179 | NuclAT_0 | - | - |
| - | 2259110..2259288 | + | 179 | NuclAT_0 | - | - |
| - | 2259110..2259288 | + | 179 | NuclAT_0 | - | - |
| - | 2259110..2259288 | + | 179 | NuclAT_0 | - | - |
| J8I94_RS10780 | 2259287..2259481 | - | 195 | WP_042047457.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| J8I94_RS10785 | 2259538..2260345 | - | 808 | Protein_2112 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2251812..2314372 | 62560 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T198240 NZ_CP072686:2257443-2257545 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT198240 NZ_CP072686:c2257546-2257315 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
