Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1829599..1829744 | Replicon | chromosome |
| Accession | NZ_CP072653 | ||
| Organism | Klebsiella pneumoniae strain KPN234 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1829635..1829737 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1829599..1829744 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8J76_RS08820 (J8J76_08820) | 1824729..1826789 | + | 2061 | WP_069339950.1 | oligopeptidase B | - |
| J8J76_RS08825 (J8J76_08825) | 1826793..1827452 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J8J76_RS08830 (J8J76_08830) | 1827531..1827761 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J8J76_RS08835 (J8J76_08835) | 1827874..1828248 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J8J76_RS08840 (J8J76_08840) | 1828252..1829121 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| J8J76_RS08845 (J8J76_08845) | 1829138..1829476 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1829599..1829744 | - | 146 | - | - | Antitoxin |
| - | 1829635..1829737 | + | 103 | - | - | Toxin |
| J8J76_RS08850 (J8J76_08850) | 1830113..1830256 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| J8J76_RS08855 (J8J76_08855) | 1830361..1831329 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| J8J76_RS08860 (J8J76_08860) | 1831486..1832139 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| J8J76_RS08865 (J8J76_08865) | 1832136..1832327 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J8J76_RS08870 (J8J76_08870) | 1832425..1832664 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J8J76_RS08875 (J8J76_08875) | 1832780..1834213 | - | 1434 | WP_069339948.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T198206 NZ_CP072653:1829635-1829737 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT198206 NZ_CP072653:c1829744-1829599 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
