Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4439856..4440001 | Replicon | chromosome |
| Accession | NZ_CP072555 | ||
| Organism | Klebsiella pneumoniae strain KP2648 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4439892..4439994 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4439856..4440001 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J7339_RS21765 (J7339_21715) | 4434986..4437046 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| J7339_RS21770 (J7339_21720) | 4437050..4437709 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J7339_RS21775 (J7339_21725) | 4437788..4438018 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J7339_RS21780 (J7339_21730) | 4438131..4438505 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J7339_RS21785 (J7339_21735) | 4438509..4439378 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| J7339_RS21790 (J7339_21740) | 4439395..4439733 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4439856..4440001 | - | 146 | - | - | Antitoxin |
| - | 4439892..4439994 | + | 103 | - | - | Toxin |
| J7339_RS21795 (J7339_21745) | 4440369..4440512 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| J7339_RS21800 (J7339_21750) | 4440617..4441585 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| J7339_RS21805 (J7339_21755) | 4441742..4442395 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| J7339_RS21810 (J7339_21760) | 4442392..4442583 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J7339_RS21815 (J7339_21765) | 4442681..4442920 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J7339_RS21820 (J7339_21770) | 4443036..4444469 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T198027 NZ_CP072555:4439892-4439994 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT198027 NZ_CP072555:c4440001-4439856 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
