Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2236076..2236347 | Replicon | chromosome |
| Accession | NZ_CP072539 | ||
| Organism | Escherichia coli O128ac:H12 strain AW1.7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2236206..2236309 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2236076..2236347 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J7886_RS10790 | 2232631..2233293 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J7886_RS10795 | 2233317..2233973 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J7886_RS10800 | 2234075..2234305 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J7886_RS10805 | 2234444..2234818 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| J7886_RS10810 | 2234822..2235694 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| J7886_RS10815 | 2235707..2236048 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2236076..2236347 | - | 272 | - | - | Antitoxin |
| - | 2236206..2236309 | + | 104 | - | - | Toxin |
| J7886_RS10820 | 2236444..2237100 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| J7886_RS10825 | 2237101..2237292 | - | 192 | WP_001313035.1 | YebW family protein | - |
| J7886_RS10830 | 2237397..2237633 | - | 237 | WP_001295499.1 | YebV family protein | - |
| J7886_RS10835 | 2237751..2239190 | - | 1440 | WP_054626428.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T197987 NZ_CP072539:2236206-2236309 [Escherichia coli O128ac:H12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT197987 NZ_CP072539:c2236347-2236076 [Escherichia coli O128ac:H12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
