Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3175189..3175336 | Replicon | chromosome |
| Accession | NZ_CP072515 | ||
| Organism | Klebsiella quasipneumoniae strain 3Z-5L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3175193..3175295 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3175189..3175336 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6325_RS15325 | 3170704..3172137 | + | 1434 | WP_109938456.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| J6325_RS15330 | 3172255..3172494 | + | 240 | WP_002911393.1 | YebV family protein | - |
| J6325_RS15335 | 3172592..3172783 | + | 192 | WP_002911395.1 | YebW family protein | - |
| J6325_RS15340 | 3172780..3173433 | - | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| J6325_RS15345 | 3173590..3174558 | + | 969 | WP_117124423.1 | VirK/YbjX family protein | - |
| J6325_RS15350 | 3174662..3174805 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 3175189..3175336 | + | 148 | - | - | Antitoxin |
| - | 3175193..3175295 | - | 103 | - | - | Toxin |
| J6325_RS15355 | 3175454..3175792 | - | 339 | WP_002911404.1 | YebY family protein | - |
| J6325_RS15360 | 3175809..3176678 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| J6325_RS15365 | 3176682..3177056 | - | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| J6325_RS15370 | 3177169..3177399 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J6325_RS15375 | 3177478..3178137 | + | 660 | WP_109938457.1 | exodeoxyribonuclease X | - |
| J6325_RS15380 | 3178122..3180200 | - | 2079 | WP_224051271.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T197944 NZ_CP072515:c3175295-3175193 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT197944 NZ_CP072515:3175189-3175336 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
