Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1997614..1997759 | Replicon | chromosome |
| Accession | NZ_CP072496 | ||
| Organism | Klebsiella pneumoniae strain KPN247 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997650..1997752 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1997614..1997759 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5253_RS09705 (J5253_09705) | 1992744..1994804 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| J5253_RS09710 (J5253_09710) | 1994808..1995467 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J5253_RS09715 (J5253_09715) | 1995546..1995776 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J5253_RS09720 (J5253_09720) | 1995889..1996263 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J5253_RS09725 (J5253_09725) | 1996267..1997136 | + | 870 | WP_159195797.1 | copper homeostasis membrane protein CopD | - |
| J5253_RS09730 (J5253_09730) | 1997153..1997491 | + | 339 | WP_167803391.1 | YebY family protein | - |
| - | 1997614..1997759 | - | 146 | - | - | Antitoxin |
| - | 1997650..1997752 | + | 103 | - | - | Toxin |
| J5253_RS09735 (J5253_09735) | 1998127..1998270 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| J5253_RS09740 (J5253_09740) | 1998375..1999343 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| J5253_RS09745 (J5253_09745) | 1999500..2000153 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| J5253_RS09750 (J5253_09750) | 2000150..2000341 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J5253_RS09755 (J5253_09755) | 2000439..2000678 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J5253_RS09760 (J5253_09760) | 2000794..2002227 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T197923 NZ_CP072496:1997650-1997752 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT197923 NZ_CP072496:c1997759-1997614 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
