Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1950780..1950927 | Replicon | chromosome |
| Accession | NZ_CP072468 | ||
| Organism | Klebsiella quasipneumoniae strain B6885 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1950821..1950923 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1950780..1950927 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6315_RS09560 | 1945915..1947975 | + | 2061 | WP_032428920.1 | oligopeptidase B | - |
| J6315_RS09565 | 1947979..1948638 | - | 660 | WP_109547165.1 | exodeoxyribonuclease X | - |
| J6315_RS09570 | 1948717..1948947 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J6315_RS09575 | 1949060..1949434 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| J6315_RS09580 | 1949438..1950307 | + | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| J6315_RS09585 | 1950324..1950662 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1950780..1950927 | - | 148 | - | - | Antitoxin |
| - | 1950821..1950923 | + | 103 | - | - | Toxin |
| J6315_RS09590 | 1951302..1951445 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| J6315_RS09595 | 1951549..1952517 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| J6315_RS09600 | 1952674..1953327 | + | 654 | WP_101994712.1 | protein-serine/threonine phosphatase | - |
| J6315_RS09605 | 1953324..1953515 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J6315_RS09610 | 1953613..1953852 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J6315_RS09615 | 1953968..1955398 | - | 1431 | WP_032428917.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T197864 NZ_CP072468:1950821-1950923 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT197864 NZ_CP072468:c1950927-1950780 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
