Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070679..2070824 | Replicon | chromosome |
| Accession | NZ_CP072463 | ||
| Organism | Klebsiella pneumoniae strain KP1517 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070715..2070817 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070679..2070824 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRG83_RS10220 (HRG83_10220) | 2065809..2067869 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HRG83_RS10225 (HRG83_10225) | 2067873..2068532 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HRG83_RS10230 (HRG83_10230) | 2068611..2068841 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HRG83_RS10235 (HRG83_10235) | 2068954..2069328 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HRG83_RS10240 (HRG83_10240) | 2069332..2070201 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| HRG83_RS10245 (HRG83_10245) | 2070218..2070556 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2070679..2070824 | - | 146 | - | - | Antitoxin |
| - | 2070715..2070817 | + | 103 | - | - | Toxin |
| HRG83_RS10250 (HRG83_10250) | 2071192..2071335 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HRG83_RS10255 (HRG83_10255) | 2071440..2072408 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HRG83_RS10260 (HRG83_10260) | 2072565..2073218 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HRG83_RS10265 (HRG83_10265) | 2073215..2073406 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HRG83_RS10270 (HRG83_10270) | 2073504..2073743 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HRG83_RS10275 (HRG83_10275) | 2073859..2075292 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T197837 NZ_CP072463:2070715-2070817 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT197837 NZ_CP072463:c2070824-2070679 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
