Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relE-dinJ/YafQ-RelB |
| Location | 1394443..1394974 | Replicon | chromosome |
| Accession | NZ_CP072455 | ||
| Organism | Xenorhabdus budapestensis strain C-7-2 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | HGO23_RS06725 | Protein ID | WP_099137432.1 |
| Coordinates | 1394693..1394974 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | dinJ | Uniprot ID | - |
| Locus tag | HGO23_RS06720 | Protein ID | WP_099137431.1 |
| Coordinates | 1394443..1394706 (+) | Length | 88 a.a. |
Genomic Context
Location: 1390784..1391152 (369 bp)
Type: Others
Protein ID: WP_209026930.1
Type: Others
Protein ID: WP_209026930.1
Location: 1391162..1391458 (297 bp)
Type: Others
Protein ID: WP_209028374.1
Type: Others
Protein ID: WP_209028374.1
Location: 1391576..1393486 (1911 bp)
Type: Others
Protein ID: WP_209028375.1
Type: Others
Protein ID: WP_209028375.1
Location: 1393817..1394302 (486 bp)
Type: Others
Protein ID: WP_099137483.1
Type: Others
Protein ID: WP_099137483.1
Location: 1394443..1394706 (264 bp)
Type: Antitoxin
Protein ID: WP_099137431.1
Type: Antitoxin
Protein ID: WP_099137431.1
Location: 1394693..1394974 (282 bp)
Type: Toxin
Protein ID: WP_099137432.1
Type: Toxin
Protein ID: WP_099137432.1
Location: 1395077..1396486 (1410 bp)
Type: Others
Protein ID: WP_209028376.1
Type: Others
Protein ID: WP_209028376.1
Location: 1396483..1397589 (1107 bp)
Type: Others
Protein ID: WP_209026933.1
Type: Others
Protein ID: WP_209026933.1
Location: 1397573..1398160 (588 bp)
Type: Others
Protein ID: WP_209026934.1
Type: Others
Protein ID: WP_209026934.1
Location: 1398157..1398603 (447 bp)
Type: Others
Protein ID: WP_099137534.1
Type: Others
Protein ID: WP_099137534.1
Location: 1398593..1399732 (1140 bp)
Type: Others
Protein ID: WP_209026935.1
Type: Others
Protein ID: WP_209026935.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGO23_RS06700 (HGO23_06700) | 1390784..1391152 | + | 369 | WP_209026930.1 | phage tail tube protein | - |
| HGO23_RS06705 (HGO23_06705) | 1391162..1391458 | + | 297 | WP_209028374.1 | phage tail assembly protein | - |
| HGO23_RS06710 (HGO23_06710) | 1391576..1393486 | + | 1911 | WP_209028375.1 | hypothetical protein | - |
| HGO23_RS06715 (HGO23_06715) | 1393817..1394302 | + | 486 | WP_099137483.1 | hypothetical protein | - |
| HGO23_RS06720 (HGO23_06720) | 1394443..1394706 | + | 264 | WP_099137431.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| HGO23_RS06725 (HGO23_06725) | 1394693..1394974 | + | 282 | WP_099137432.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
| HGO23_RS06730 (HGO23_06730) | 1395077..1396486 | + | 1410 | WP_209028376.1 | DNA circularization N-terminal domain-containing protein | - |
| HGO23_RS06735 (HGO23_06735) | 1396483..1397589 | + | 1107 | WP_209026933.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| HGO23_RS06740 (HGO23_06740) | 1397573..1398160 | + | 588 | WP_209026934.1 | phage baseplate assembly protein | - |
| HGO23_RS06745 (HGO23_06745) | 1398157..1398603 | + | 447 | WP_099137534.1 | phage GP46 family protein | - |
| HGO23_RS06750 (HGO23_06750) | 1398593..1399732 | + | 1140 | WP_209026935.1 | baseplate J/gp47 family protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1357211..1423741 | 66530 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10820.23 Da Isoelectric Point: 8.0705
>T197784 WP_099137432.1 NZ_CP072455:1394693-1394974 [Xenorhabdus budapestensis]
MRTIERSTAFKRDYKRESKGQYRVGLDDALVPVLVALANNEPLERRHRDHELDGNWSGYRECHIKPDLLLIYQKPDSETL
QLARLGSHSQLFG
MRTIERSTAFKRDYKRESKGQYRVGLDDALVPVLVALANNEPLERRHRDHELDGNWSGYRECHIKPDLLLIYQKPDSETL
QLARLGSHSQLFG
Download Length: 282 bp
>T197784 NZ_CP096713:16036-16392 [Acinetobacter baumannii]
ATGTGGACAGTCATTACAACGGATCTGTTTAATGAATGGCTTGAACAGCAAGATGAAGCAACACAAGAGAAAGTCTTAGC
TGCATTGGTTGTTCTACAACAGCAAGGGCCTAGTTTAGGTCGTCCTTTAGTAGATACCGTCTACGATTCTAAATTTACCA
ATATGAAGGAACTACGTGTTCAGCATCGTGGTAAACCGTTAAGGGCATTTTTTGCATTCGATCCCCTAAGACAAGCGATT
GTGCTGTGTATTGGTGATAAGAGTAATAAAAAGCGTTTTTATACAGAGATGCTAGCAATTGCAGATGAGCAATACGCACT
TCATCTCTCAACTTTAGGAGATCAATCTAATGGCTAA
ATGTGGACAGTCATTACAACGGATCTGTTTAATGAATGGCTTGAACAGCAAGATGAAGCAACACAAGAGAAAGTCTTAGC
TGCATTGGTTGTTCTACAACAGCAAGGGCCTAGTTTAGGTCGTCCTTTAGTAGATACCGTCTACGATTCTAAATTTACCA
ATATGAAGGAACTACGTGTTCAGCATCGTGGTAAACCGTTAAGGGCATTTTTTGCATTCGATCCCCTAAGACAAGCGATT
GTGCTGTGTATTGGTGATAAGAGTAATAAAAAGCGTTTTTATACAGAGATGCTAGCAATTGCAGATGAGCAATACGCACT
TCATCTCTCAACTTTAGGAGATCAATCTAATGGCTAA
Antitoxin
Download Length: 88 a.a. Molecular weight: 9738.08 Da Isoelectric Point: 4.6926
>AT197784 WP_099137431.1 NZ_CP072455:1394443-1394706 [Xenorhabdus budapestensis]
MTTETYVRARIDAETKERARAALEAMGLSVSDAIRLLMLRIADEQRLPFDVRVPNATTQKAMEELEAGKGKRFDSVSALM
ADLHEDD
MTTETYVRARIDAETKERARAALEAMGLSVSDAIRLLMLRIADEQRLPFDVRVPNATTQKAMEELEAGKGKRFDSVSALM
ADLHEDD
Download Length: 264 bp
>AT197784 NZ_CP096713:16385-16687 [Acinetobacter baumannii]
ATGGCTAAGAGCTTACAAGAATTATTGGCTAGTCGCTCTCCAGAGAGTCAAGCTCGTATTCAAAAAATGGCTGATGAATT
ACTTTTAGAAAGTCAGCTTCACCTTATCCGAGAAGAGTTAGAAATTTCCCAGAAAGAACTAGCTGCAACCCTTGGAATTA
AACAGCCGTCATTATCAGCAATCGAAAATCGTGGTCATGATCTTAAAATTTCAACGATGAAAAAGTATGTTGAAGCAATG
GGTGGAAAACTTCGTATTGATGTAGAGCTTCCAACAGGAAAACACATAGGGTTCAATGTCTAA
ATGGCTAAGAGCTTACAAGAATTATTGGCTAGTCGCTCTCCAGAGAGTCAAGCTCGTATTCAAAAAATGGCTGATGAATT
ACTTTTAGAAAGTCAGCTTCACCTTATCCGAGAAGAGTTAGAAATTTCCCAGAAAGAACTAGCTGCAACCCTTGGAATTA
AACAGCCGTCATTATCAGCAATCGAAAATCGTGGTCATGATCTTAAAATTTCAACGATGAAAAAGTATGTTGAAGCAATG
GGTGGAAAACTTCGTATTGATGTAGAGCTTCCAACAGGAAAACACATAGGGTTCAATGTCTAA