Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 3391375..3391909 | Replicon | chromosome |
| Accession | NZ_CP072453 | ||
| Organism | Providencia sp. R33 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | J6836_RS15870 | Protein ID | WP_219244928.1 |
| Coordinates | 3391375..3391665 (-) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | J6836_RS15875 | Protein ID | WP_219249535.1 |
| Coordinates | 3391655..3391909 (-) | Length | 85 a.a. |
Genomic Context
Location: 3388963..3390144 (1182 bp)
Type: Others
Protein ID: WP_219244927.1
Type: Others
Protein ID: WP_219244927.1
Location: 3392686..3393738 (1053 bp)
Type: Others
Protein ID: WP_219244930.1
Type: Others
Protein ID: WP_219244930.1
Location: 3393921..3394817 (897 bp)
Type: Others
Protein ID: WP_219244931.1
Type: Others
Protein ID: WP_219244931.1
Location: 3386912..3388204 (1293 bp)
Type: Others
Protein ID: WP_219244925.1
Type: Others
Protein ID: WP_219244925.1
Location: 3388219..3388683 (465 bp)
Type: Others
Protein ID: WP_219244926.1
Type: Others
Protein ID: WP_219244926.1
Location: 3391375..3391665 (291 bp)
Type: Toxin
Protein ID: WP_219244928.1
Type: Toxin
Protein ID: WP_219244928.1
Location: 3391655..3391909 (255 bp)
Type: Antitoxin
Protein ID: WP_219249535.1
Type: Antitoxin
Protein ID: WP_219249535.1
Location: 3392036..3392581 (546 bp)
Type: Others
Protein ID: WP_219244929.1
Type: Others
Protein ID: WP_219244929.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6836_RS15840 (J6836_15845) | 3386912..3388204 | - | 1293 | WP_219244925.1 | N-acetylmuramoyl-L-alanine amidase AmiB | - |
| J6836_RS15845 (J6836_15850) | 3388219..3388683 | - | 465 | WP_219244926.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| J6836_RS15850 (J6836_15855) | 3388963..3390144 | + | 1182 | WP_219244927.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
| J6836_RS15870 (J6836_15875) | 3391375..3391665 | - | 291 | WP_219244928.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| J6836_RS15875 (J6836_15880) | 3391655..3391909 | - | 255 | WP_219249535.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| J6836_RS15880 (J6836_15885) | 3392036..3392581 | - | 546 | WP_219244929.1 | oligoribonuclease | - |
| J6836_RS15885 (J6836_15890) | 3392686..3393738 | + | 1053 | WP_219244930.1 | small ribosomal subunit biogenesis GTPase RsgA | - |
| J6836_RS15890 (J6836_15895) | 3393921..3394817 | + | 897 | WP_219244931.1 | archaetidylserine decarboxylase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11422.45 Da Isoelectric Point: 9.9326
>T197776 WP_219244928.1 NZ_CP072453:c3391665-3391375 [Providencia sp. R33]
MIFDIAFDERALREWKKLDCSIREQFKKKLKKLQLNPYIESLRLHGELSNCYKIKLRASGFRLVYQVIDDEIVIFVVAVG
KREDEKVYKSATNRLI
MIFDIAFDERALREWKKLDCSIREQFKKKLKKLQLNPYIESLRLHGELSNCYKIKLRASGFRLVYQVIDDEIVIFVVAVG
KREDEKVYKSATNRLI
Download Length: 291 bp
>T197776 NZ_CP096702:1598204-1598386 [Acinetobacter baumannii]
GTGAAAAGTCTGGATTTAATCAAAATGATTGAAGCAGATGGTTGGTATGAGGTTAGGGTTTCAGGAAGTCATCATCACTT
TAAACACCCAACCAAAAAGGGGTTAGTTACAATCCCACATCCTAAAAAGGATTTACCAAACGGAACTGTTAAAAGCATTT
TGAAACAAGCGGGTCTAAATTGA
GTGAAAAGTCTGGATTTAATCAAAATGATTGAAGCAGATGGTTGGTATGAGGTTAGGGTTTCAGGAAGTCATCATCACTT
TAAACACCCAACCAAAAAGGGGTTAGTTACAATCCCACATCCTAAAAAGGATTTACCAAACGGAACTGTTAAAAGCATTT
TGAAACAAGCGGGTCTAAATTGA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9704.12 Da Isoelectric Point: 4.8538
>AT197776 WP_219249535.1 NZ_CP072453:c3391909-3391655 [Providencia sp. R33]
MSTIQIRVDEQLKKDAYQAFDKLNLSPSDALRLFLRYVAENEKLPFSEVSIVVSEADEDEDILAVVRNRLKKPAKRIRVN
IDDI
MSTIQIRVDEQLKKDAYQAFDKLNLSPSDALRLFLRYVAENEKLPFSEVSIVVSEADEDEDILAVVRNRLKKPAKRIRVN
IDDI
Download Length: 255 bp
>AT197776 NZ_CP096702:1598479-1598883 [Acinetobacter baumannii]
ATGTTATATCCAATTGCAATTGAACGAGGATCAGATACTGAGGCATTTGGTGTCACTGTTCCTGATATTCCAGGTTGTTT
TAGTGCTGGTGACACACTTGAAGAAGCTATTGAGAATGTTAAAGAAGCTATTTCAGGCCATTTAGAAATATTGGCTGAAG
ATGGTGAGGAAATCCCATTAGCTTCCGAACTAGTTAAATTTGTCGATGATCCTGAATATAAAGGAATGATCTGGGCGGTT
ACCGAAGTTGATGTTAGTCGTTATCTGGGTAAACCAGAAAAAATCAATGTTACTTTACCAAGCCGTTTGATTCGTAAAAT
TGATGAGAATGTAGGTAAAGGTAAGAGATATACTACTCGATCGGCTTTCTTGGCTGCTGGTGCTGAAAAACTTTTACATG
CATAG
ATGTTATATCCAATTGCAATTGAACGAGGATCAGATACTGAGGCATTTGGTGTCACTGTTCCTGATATTCCAGGTTGTTT
TAGTGCTGGTGACACACTTGAAGAAGCTATTGAGAATGTTAAAGAAGCTATTTCAGGCCATTTAGAAATATTGGCTGAAG
ATGGTGAGGAAATCCCATTAGCTTCCGAACTAGTTAAATTTGTCGATGATCCTGAATATAAAGGAATGATCTGGGCGGTT
ACCGAAGTTGATGTTAGTCGTTATCTGGGTAAACCAGAAAAAATCAATGTTACTTTACCAAGCCGTTTGATTCGTAAAAT
TGATGAGAATGTAGGTAAAGGTAAGAGATATACTACTCGATCGGCTTTCTTGGCTGCTGGTGCTGAAAAACTTTTACATG
CATAG