Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 320993..321264 | Replicon | chromosome |
| Accession | NZ_CP072322 | ||
| Organism | Escherichia coli strain EC-JS426 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 321123..321226 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 320993..321264 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6247_RS01540 | 317548..318210 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J6247_RS01545 | 318234..318890 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J6247_RS01550 | 318992..319222 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J6247_RS01555 | 319361..319735 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| J6247_RS01560 | 319739..320611 | + | 873 | WP_134159187.1 | copper homeostasis membrane protein CopD | - |
| J6247_RS01565 | 320624..320965 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 320993..321264 | - | 272 | - | - | Antitoxin |
| - | 321123..321226 | + | 104 | - | - | Toxin |
| J6247_RS01570 | 321361..322017 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| J6247_RS01575 | 322018..322209 | - | 192 | WP_000457842.1 | YebW family protein | - |
| J6247_RS01580 | 322314..322550 | - | 237 | WP_001295499.1 | YebV family protein | - |
| J6247_RS01585 | 322668..324107 | - | 1440 | WP_024198516.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T197628 NZ_CP072322:321123-321226 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT197628 NZ_CP072322:c321264-320993 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
