Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relE-yefM/YoeB-RelB |
| Location | 50299..50809 | Replicon | plasmid p1KSKSensitive |
| Accession | NZ_CP072306 | ||
| Organism | Acinetobacter baumannii strain KSK Sensitive | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | J6I88_RS18615 | Protein ID | WP_000827770.1 |
| Coordinates | 50549..50809 (+) | Length | 87 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | J6I88_RS18610 | Protein ID | WP_001024070.1 |
| Coordinates | 50299..50559 (+) | Length | 87 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6I88_RS18570 (J6I88_18570) | 45705..46373 | - | 669 | WP_000037012.1 | HGGxSTG domain-containing protein | - |
| J6I88_RS18575 (J6I88_18575) | 46447..46977 | - | 531 | WP_000219384.1 | TIGR02594 family protein | - |
| J6I88_RS18580 (J6I88_18580) | 46958..47209 | - | 252 | WP_001087198.1 | hypothetical protein | - |
| J6I88_RS18585 (J6I88_18585) | 47202..47648 | - | 447 | WP_000467408.1 | hypothetical protein | - |
| J6I88_RS18590 (J6I88_18590) | 47708..48175 | - | 468 | WP_001123866.1 | hypothetical protein | - |
| J6I88_RS18595 (J6I88_18595) | 48168..48698 | - | 531 | WP_000587898.1 | DUF2829 domain-containing protein | - |
| J6I88_RS18600 (J6I88_18600) | 48695..49054 | - | 360 | WP_227501444.1 | hypothetical protein | - |
| J6I88_RS18605 (J6I88_18605) | 49413..49808 | - | 396 | WP_000637615.1 | hypothetical protein | - |
| J6I88_RS18610 (J6I88_18610) | 50299..50559 | + | 261 | WP_001024070.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| J6I88_RS18615 (J6I88_18615) | 50549..50809 | + | 261 | WP_000827770.1 | Txe/YoeB family addiction module toxin | Toxin |
| J6I88_RS18620 (J6I88_18620) | 50822..51004 | + | 183 | WP_000764644.1 | hypothetical protein | - |
| J6I88_RS18625 (J6I88_18625) | 51001..51267 | - | 267 | WP_000312809.1 | hypothetical protein | - |
| J6I88_RS18630 (J6I88_18630) | 51257..51856 | - | 600 | WP_000892963.1 | hypothetical protein | - |
| J6I88_RS18635 (J6I88_18635) | 51849..52055 | - | 207 | WP_000801902.1 | hypothetical protein | - |
| J6I88_RS18640 (J6I88_18640) | 52074..52421 | - | 348 | WP_000827933.1 | hypothetical protein | - |
| J6I88_RS18645 (J6I88_18645) | 52418..52696 | - | 279 | WP_000587223.1 | hypothetical protein | - |
| J6I88_RS18650 (J6I88_18650) | 52711..52920 | - | 210 | WP_000912547.1 | hypothetical protein | - |
| J6I88_RS18655 (J6I88_18655) | 52913..53383 | - | 471 | WP_000224739.1 | hypothetical protein | - |
| J6I88_RS18660 (J6I88_18660) | 53409..53924 | - | 516 | WP_000119773.1 | hypothetical protein | - |
| J6I88_RS18665 (J6I88_18665) | 53921..54568 | - | 648 | WP_000919094.1 | hypothetical protein | - |
| J6I88_RS18670 (J6I88_18670) | 54599..54895 | - | 297 | WP_001181556.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..55356 | 55356 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 87 a.a. Molecular weight: 10117.52 Da Isoelectric Point: 8.4866
>T197608 WP_000827770.1 NZ_CP072306:50549-50809 [Acinetobacter baumannii]
MKRNIDFTPTAWDDYLYWQNQDKKTLKRINALIKDCQREPFSGIGKPEGLLGDLSGFWSRRIDEKNRLVYAVDDAAITII
SCRHHY
MKRNIDFTPTAWDDYLYWQNQDKKTLKRINALIKDCQREPFSGIGKPEGLLGDLSGFWSRRIDEKNRLVYAVDDAAITII
SCRHHY
Download Length: 261 bp
>T197608 NZ_CP096272:20169-20345 [Staphylococcus aureus]
TTGGATAGGTGGTGGCTATCTGAGTATAAGGAGGTGGTGCCTATGGTGGCATTACTGAAATCTTTAGAAAGGAGACGCCT
AATGATTACAATTAGTACCATGTTGCAGTTTGGTTTATTCCTTATTGCATTGATAGGTCTAGTAATCAAGCTTATTGAAT
TAAGCAATAAAAAATAA
TTGGATAGGTGGTGGCTATCTGAGTATAAGGAGGTGGTGCCTATGGTGGCATTACTGAAATCTTTAGAAAGGAGACGCCT
AATGATTACAATTAGTACCATGTTGCAGTTTGGTTTATTCCTTATTGCATTGATAGGTCTAGTAATCAAGCTTATTGAAT
TAAGCAATAAAAAATAA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9656.75 Da Isoelectric Point: 4.4067
>AT197608 WP_001024070.1 NZ_CP072306:50299-50559 [Acinetobacter baumannii]
MNILTYSEARNNLKEVIDQVINDADVTVITRREGQDAVVMGLDHYNSMVETLYLLSNPANSAHLAKSISEYRANKATTRD
LIDDET
MNILTYSEARNNLKEVIDQVINDADVTVITRREGQDAVVMGLDHYNSMVETLYLLSNPANSAHLAKSISEYRANKATTRD
LIDDET
Download Length: 261 bp
>AT197608 NZ_CP096272:c20507-20333 [Staphylococcus aureus]
ATTTGATATTTATATTATGGTGTGTTAATTTATATATAGAAAAAGGGCAACATGCGCAAACATGTTACCCTAGTGAGCCC
GTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGAT
GGTTATTTTTTATTG
ATTTGATATTTATATTATGGTGTGTTAATTTATATATAGAAAAAGGGCAACATGCGCAAACATGTTACCCTAGTGAGCCC
GTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGAT
GGTTATTTTTTATTG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|