Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3600331..3600476 | Replicon | chromosome |
| Accession | NZ_CP072200 | ||
| Organism | Klebsiella pneumoniae strain B5055 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3600338..3600440 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3600331..3600476 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6T75_RS17905 (J6T75_17840) | 3595863..3597296 | + | 1434 | WP_016529029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| J6T75_RS17910 (J6T75_17845) | 3597412..3597651 | + | 240 | WP_002911393.1 | YebV family protein | - |
| J6T75_RS17915 (J6T75_17850) | 3597749..3597940 | + | 192 | WP_002911395.1 | YebW family protein | - |
| J6T75_RS17920 (J6T75_17855) | 3597937..3598590 | - | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| J6T75_RS17925 (J6T75_17860) | 3598747..3599715 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| J6T75_RS17930 (J6T75_17865) | 3599820..3599963 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3600331..3600476 | + | 146 | - | - | Antitoxin |
| - | 3600338..3600440 | - | 103 | - | - | Toxin |
| J6T75_RS17935 (J6T75_17870) | 3600599..3600937 | - | 339 | WP_016529031.1 | YebY family protein | - |
| J6T75_RS17940 (J6T75_17875) | 3600954..3601823 | - | 870 | WP_004184661.1 | copper homeostasis membrane protein CopD | - |
| J6T75_RS17945 (J6T75_17880) | 3601827..3602201 | - | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| J6T75_RS17950 (J6T75_17885) | 3602314..3602544 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J6T75_RS17955 (J6T75_17890) | 3602623..3603282 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J6T75_RS17960 (J6T75_17895) | 3603286..3605346 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T197499 NZ_CP072200:c3600440-3600338 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT197499 NZ_CP072200:3600331-3600476 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
