197402

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 1614368..1614845 Replicon chromosome
Accession NZ_CP072146
Organism Rhizobium sp. K1/93

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag J5287_RS08015 Protein ID WP_209184349.1
Coordinates 1614582..1614845 (-) Length 88 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag J5287_RS08010 Protein ID WP_209184348.1
Coordinates 1614368..1614595 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J5287_RS07990 (J5287_07980) 1609602..1610510 + 909 WP_111222671.1 metallophosphoesterase -
J5287_RS07995 (J5287_07985) 1610827..1611339 + 513 WP_209184346.1 RNA polymerase sigma factor -
J5287_RS08000 (J5287_07990) 1611342..1612175 + 834 WP_209184592.1 anti-sigma factor -
J5287_RS08005 (J5287_07995) 1612255..1613997 - 1743 WP_209184347.1 2-isopropylmalate synthase -
J5287_RS08010 (J5287_08000) 1614368..1614595 - 228 WP_209184348.1 CopG family transcriptional regulator Antitoxin
J5287_RS08015 (J5287_08005) 1614582..1614845 - 264 WP_209184349.1 BrnT family toxin Toxin
J5287_RS08020 (J5287_08010) 1614882..1616072 - 1191 WP_209184350.1 benzoate/H(+) symporter BenE family transporter -
J5287_RS08025 (J5287_08015) 1616307..1616891 - 585 WP_142823370.1 ATP-dependent Clp protease proteolytic subunit -
J5287_RS08030 (J5287_08020) 1617121..1617939 + 819 WP_209184351.1 DUF2076 domain-containing protein -
J5287_RS08035 (J5287_08025) 1618003..1618467 - 465 WP_142823372.1 preQ(1) synthase -
J5287_RS08040 (J5287_08030) 1618676..1619356 + 681 WP_209184352.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10153.67 Da        Isoelectric Point: 10.5475

>T197402 WP_209184349.1 NZ_CP072146:c1614845-1614582 [Rhizobium sp. K1/93]
MAFEFDPDKSRTNKIKHGIDLVEAQRLWIDRFLISFPARGGLESRFVAVGQIDGKHWSAICTRRHDNIRIISVRRSRKEE
IALYEGK

Download         Length: 264 bp

>T197402 NZ_CP096140:3071511-3071663 [Xanthomonas prunicola]
ATGAAGCGACTGCTGACACTGATGGTACTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACATGCAGGGCGCAGGTGGGAAGGTCGAGAAAACCGCCGAAAAATGCAGCGACGGTAAGTGCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8402.36 Da        Isoelectric Point: 4.0813

>AT197402 WP_209184348.1 NZ_CP072146:c1614595-1614368 [Rhizobium sp. K1/93]
MKASELDEKFDNGEDILDYLDLTKATRPNMATQKVSVDFATSVVNSLDEEAARLGLTRQSLINLWIEERLSAAQD

Download         Length: 228 bp

>AT197402 NZ_CP096140:3071738-3071872 [Xanthomonas prunicola]
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCGATGTTGTCGGTCGGTATGCTGTCGGGCTGCAACACCGTCGCAGGTGC
TGGCAAGGACGTGAAGGGTGCTGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References