Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 55626..56106 Replicon chromosome
Accession NZ_CP072146
Organism Rhizobium sp. K1/93

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag J5287_RS00325 Protein ID WP_209183044.1
Coordinates 55834..56106 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag J5287_RS00320 Protein ID WP_209183043.1
Coordinates 55626..55850 (+) Length 75 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J5287_RS00285 (J5287_00285) 50846..51193 - 348 WP_209183039.1 DUF86 domain-containing protein -
J5287_RS00290 (J5287_00290) 51194..51490 - 297 WP_142824229.1 nucleotidyltransferase domain-containing protein -
J5287_RS00295 (J5287_00295) 51635..52768 + 1134 WP_209183040.1 site-specific DNA-methyltransferase -
J5287_RS00300 (J5287_00300) 52883..53248 - 366 WP_111217840.1 nuclear transport factor 2 family protein -
J5287_RS00305 (J5287_00305) 53253..53867 - 615 WP_209183041.1 HAD family phosphatase -
J5287_RS00310 (J5287_00310) 53884..54963 - 1080 WP_209183059.1 A/G-specific adenine glycosylase -
J5287_RS00315 (J5287_00315) 55063..55563 + 501 WP_209183042.1 DUF721 domain-containing protein -
J5287_RS00320 (J5287_00320) 55626..55850 + 225 WP_209183043.1 DUF6290 family protein Antitoxin
J5287_RS00325 (J5287_00325) 55834..56106 + 273 WP_209183044.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
J5287_RS00330 (J5287_00330) 56318..57013 + 696 WP_209183045.1 DsbA family protein -
J5287_RS00335 (J5287_00335) 57434..60892 + 3459 WP_209183046.1 chromosome segregation SMC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-88)

Antitoxin

Relaxosome protein TraY

(4-47)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10710.28 Da        Isoelectric Point: 10.3301

>T197399 WP_209183044.1 NZ_CP072146:55834-56106 [Rhizobium sp. K1/93]
MAWRIEFQRPAERDLEKLDHESVKRILRFLHTRVASLEDPRSIGEALRGSELGNFWKYRVGDYRIIADIDDGTVRILVVR
IGNRKDVYRR

Download         Length: 273 bp

>T197399 NZ_CP096138:3070213-3070347 [Xanthomonas prunicola]
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCGATGTTGTCGGTCGGTATGCTGTCGGGCTGCAACACCGTCGCAGGTGC
TGGCAAGGACGTGAAGGGTGCTGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 8517.61 Da        Isoelectric Point: 4.4056

>AT197399 WP_209183043.1 NZ_CP072146:55626-55850 [Rhizobium sp. K1/93]
MLALRLPPDIEARLDELAKRTGRSKSFYARQAILEHLDDLEDLYVAEQMLEEFRRGDSDSISLAELMARHGVED

Download         Length: 225 bp

>AT197399 NZ_CP096138:3069986-3070138 [Xanthomonas prunicola]
ATGAAGCGACTGCTGACACTGATGGTACTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACATGCAGGGCGCAGGTGGGAAGGTCGAGAAAACCGCCGAAAAATGCAGCGACGGTAAGTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References