Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2390168..2390336 | Replicon | chromosome |
| Accession | NZ_CP072119 | ||
| Organism | Klebsiella michiganensis strain 12084 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2390226..2390329 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2390168..2390336 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5O09_RS11485 (J5O09_11485) | 2385295..2387355 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| J5O09_RS11490 (J5O09_11490) | 2387362..2388021 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| J5O09_RS11495 (J5O09_11495) | 2388100..2388330 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| J5O09_RS11500 (J5O09_11500) | 2388466..2388840 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| J5O09_RS11505 (J5O09_11505) | 2388845..2389714 | + | 870 | WP_038424672.1 | copper homeostasis membrane protein CopD | - |
| J5O09_RS11510 (J5O09_11510) | 2389731..2390069 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2390168..2390336 | - | 169 | - | - | Antitoxin |
| - | 2390226..2390329 | + | 104 | - | - | Toxin |
| J5O09_RS11515 (J5O09_11515) | 2390454..2391413 | - | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| J5O09_RS11520 (J5O09_11520) | 2391428..2393758 | - | 2331 | WP_076752314.1 | fimbria/pilus outer membrane usher protein | - |
| J5O09_RS11525 (J5O09_11525) | 2393761..2394525 | - | 765 | WP_042945473.1 | fimbria/pilus periplasmic chaperone | - |
| J5O09_RS11530 (J5O09_11530) | 2394544..2395062 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T197342 NZ_CP072119:2390226-2390329 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT197342 NZ_CP072119:c2390336-2390168 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
