Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 908523..909276 | Replicon | chromosome |
| Accession | NZ_CP072119 | ||
| Organism | Klebsiella michiganensis strain 12084 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | R8WN26 |
| Locus tag | J5O09_RS04445 | Protein ID | WP_016154457.1 |
| Coordinates | 908523..908900 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | J5O09_RS04450 | Protein ID | WP_162838704.1 |
| Coordinates | 908950..909276 (-) | Length | 109 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5O09_RS04415 (J5O09_04415) | 903812..904603 | - | 792 | Protein_869 | IS630-like element ISSpu2 family transposase | - |
| J5O09_RS04420 (J5O09_04420) | 904775..905059 | - | 285 | WP_008913927.1 | hypothetical protein | - |
| J5O09_RS04425 (J5O09_04425) | 905168..906439 | - | 1272 | WP_004856926.1 | integrase arm-type DNA-binding domain-containing protein | - |
| J5O09_RS04430 (J5O09_04430) | 906876..907721 | - | 846 | Protein_872 | DUF4942 domain-containing protein | - |
| J5O09_RS04435 (J5O09_04435) | 907802..908005 | - | 204 | WP_009652505.1 | DUF957 domain-containing protein | - |
| J5O09_RS04440 (J5O09_04440) | 908035..908526 | - | 492 | WP_009652438.1 | DUF5983 family protein | - |
| J5O09_RS04445 (J5O09_04445) | 908523..908900 | - | 378 | WP_016154457.1 | TA system toxin CbtA family protein | Toxin |
| J5O09_RS04450 (J5O09_04450) | 908950..909276 | - | 327 | WP_162838704.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| J5O09_RS04455 (J5O09_04455) | 909333..909554 | - | 222 | WP_009652392.1 | DUF987 domain-containing protein | - |
| J5O09_RS04460 (J5O09_04460) | 909568..910050 | - | 483 | WP_016154455.1 | DNA repair protein RadC | - |
| J5O09_RS04465 (J5O09_04465) | 910062..910280 | - | 219 | WP_009652503.1 | hypothetical protein | - |
| J5O09_RS04470 (J5O09_04470) | 910291..910764 | - | 474 | WP_009652453.1 | antirestriction protein | - |
| J5O09_RS04475 (J5O09_04475) | 910781..911035 | - | 255 | WP_009652519.1 | hypothetical protein | - |
| J5O09_RS04480 (J5O09_04480) | 911035..911853 | - | 819 | WP_009652424.1 | DUF932 domain-containing protein | - |
| J5O09_RS04485 (J5O09_04485) | 911957..912190 | - | 234 | WP_009652474.1 | DUF905 domain-containing protein | - |
| J5O09_RS04490 (J5O09_04490) | 912246..912467 | - | 222 | WP_009652443.1 | hypothetical protein | - |
| J5O09_RS04495 (J5O09_04495) | 912550..913062 | - | 513 | WP_009652395.1 | DUF4234 domain-containing protein | - |
| J5O09_RS04500 (J5O09_04500) | 913111..913581 | - | 471 | WP_009652431.1 | hypothetical protein | - |
| J5O09_RS04505 (J5O09_04505) | 913628..913939 | - | 312 | WP_009652410.1 | hypothetical protein | - |
| J5O09_RS04510 (J5O09_04510) | 913952..914218 | - | 267 | WP_009652486.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14168.19 Da Isoelectric Point: 9.5224
>T197338 WP_016154457.1 NZ_CP072119:c908900-908523 [Klebsiella michiganensis]
MQTQPVPPKREVSPRPSPVAIWQRLLSHLLDRHYGLTLNDTPFGKDGVIQEHIDAGISLCDAVNFIVEKYDLVRTDRRGF
NAETQSPLLTSIDILRARKATGLMTRHSYRAVTDITTGKYREVQP
MQTQPVPPKREVSPRPSPVAIWQRLLSHLLDRHYGLTLNDTPFGKDGVIQEHIDAGISLCDAVNFIVEKYDLVRTDRRGF
NAETQSPLLTSIDILRARKATGLMTRHSYRAVTDITTGKYREVQP
Download Length: 378 bp
>T197338 NZ_CP096018:c177203-176886 [Alkalimarinus coralli]
ATGACACAATTTACTCTATATAAAAACGAAGACAGAAGTTCTCGAAAAACTTACCCATATTTTGTTAATGTACAAAGCGA
CTTACTCAAAGACCTAAACTCCCGTTTAGTAATTCCCCTTTCGCCAGGTTCAGCAGTAAATAACACGAACGCAAAAAAAC
TTTGCCCCATTATCAACCTAGACGAAGGAAGCTTTATACTTTTGGCCCATCAAATGACATCGGTGCCGAGGTCTATATTG
AAGGCTGAAGTTACTTCTCTTGAGAGCTACAGGTACGAAATTATGGATGCTATTGATATGCTCATAACCGGCATTTAA
ATGACACAATTTACTCTATATAAAAACGAAGACAGAAGTTCTCGAAAAACTTACCCATATTTTGTTAATGTACAAAGCGA
CTTACTCAAAGACCTAAACTCCCGTTTAGTAATTCCCCTTTCGCCAGGTTCAGCAGTAAATAACACGAACGCAAAAAAAC
TTTGCCCCATTATCAACCTAGACGAAGGAAGCTTTATACTTTTGGCCCATCAAATGACATCGGTGCCGAGGTCTATATTG
AAGGCTGAAGTTACTTCTCTTGAGAGCTACAGGTACGAAATTATGGATGCTATTGATATGCTCATAACCGGCATTTAA
Antitoxin
Download Length: 109 a.a. Molecular weight: 12079.85 Da Isoelectric Point: 6.6283
>AT197338 WP_162838704.1 NZ_CP072119:c909276-908950 [Klebsiella michiganensis]
IAAPWWGLKRDITPCFGARLVQEGNRLHYLNDRASITGTFSDADLRHLDQAFPLLLKQLELMLLSGELNPRHQHCVTLYA
KGLICEADSLGSHGYVYLAIYPTPATTE
IAAPWWGLKRDITPCFGARLVQEGNRLHYLNDRASITGTFSDADLRHLDQAFPLLLKQLELMLLSGELNPRHQHCVTLYA
KGLICEADSLGSHGYVYLAIYPTPATTE
Download Length: 327 bp
>AT197338 NZ_CP096018:c177448-177203 [Alkalimarinus coralli]
ATGCAACAAGCCTTCAATGAAAATGCACCTAAAAAAGCAACTAATTTAAGCATCAATAGCGATCTTCTTAATAAGGCTCG
CGGCCTTAAAATTAACCTTTCTGCGACCCTTGAGCAAGCCTTAACTATACAAGTAAGAAACGCTGAAAGAGAACTTTGGG
TAGAAGAGAACAAAGAAGCAATTCAAGCCTTAAACGAGTTAGCCGATAAAAATGGATTATTTTCAGACTCTTTTCGAGAC
TTCTAA
ATGCAACAAGCCTTCAATGAAAATGCACCTAAAAAAGCAACTAATTTAAGCATCAATAGCGATCTTCTTAATAAGGCTCG
CGGCCTTAAAATTAACCTTTCTGCGACCCTTGAGCAAGCCTTAACTATACAAGTAAGAAACGCTGAAAGAGAACTTTGGG
TAGAAGAGAACAAAGAAGCAATTCAAGCCTTAAACGAGTTAGCCGATAAAAATGGATTATTTTCAGACTCTTTTCGAGAC
TTCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|