Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3310706..3311234 Replicon chromosome
Accession NZ_CP072110
Organism Psychrosphaera ytuae strain MTZ26

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag J1N51_RS14615 Protein ID WP_208831961.1
Coordinates 3310947..3311234 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag J1N51_RS14610 Protein ID WP_208831960.1
Coordinates 3310706..3310957 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J1N51_RS14580 (J1N51_14580) 3305960..3306706 + 747 WP_208831954.1 hypothetical protein -
J1N51_RS14585 (J1N51_14585) 3306752..3307117 + 366 WP_208831955.1 DUF3703 domain-containing protein -
J1N51_RS14590 (J1N51_14590) 3307136..3307705 + 570 WP_208831956.1 hypothetical protein -
J1N51_RS14595 (J1N51_14595) 3307774..3308316 + 543 WP_208831957.1 hypothetical protein -
J1N51_RS14600 (J1N51_14600) 3309171..3309623 + 453 WP_208831958.1 hypothetical protein -
J1N51_RS14605 (J1N51_14605) 3309751..3310548 + 798 WP_208831959.1 class III extradiol ring-cleavage dioxygenase -
J1N51_RS14610 (J1N51_14610) 3310706..3310957 + 252 WP_208831960.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
J1N51_RS14615 (J1N51_14615) 3310947..3311234 + 288 WP_208831961.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
J1N51_RS14760 3311636..3311773 - 138 Protein_2829 GTP cyclohydrolase I -
J1N51_RS14620 (J1N51_14620) 3312177..3313040 + 864 WP_208831962.1 PEP-CTERM sorting domain-containing protein -
J1N51_RS14625 (J1N51_14625) 3313591..3314193 - 603 WP_208831963.1 pyridoxal 5'-phosphate synthase -
J1N51_RS14630 (J1N51_14630) 3314465..3314944 - 480 WP_208831964.1 hypothetical protein -
J1N51_RS14635 (J1N51_14635) 3315228..3315719 + 492 WP_208831965.1 nuclear transport factor 2 family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(11-54)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11188.22 Da        Isoelectric Point: 10.3762

>T197299 WP_208831961.1 NZ_CP072110:3310947-3311234 [Psychrosphaera ytuae]
MTYKLKFLPLAKKEWDKLAEPLKKQFKNKLAERLENPHVPSDKLRGYESVYKIKLRTAGYRLAYEVLDNEVVVYVLAVGK
RDKNAIYKKLASRME

Download         Length: 288 bp

>T197299 NZ_CP095922:3465743-3466321 [Pseudomonas aeruginosa]
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGCTCCGCGCA
CACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTGTGCCTGATGGCACTGGCCTTCGAGGACCAAC
TGGCCGGCCTGGACCTCGGCAAGGTCCTGCGCATGTGCGTGGTCCACGACCTCGGCGAAGCGATCCACGGCGACATCCCC
GCCGTCGAGCAGGCCGCGCACCCGGACAAAGGCGAACAGGAACGCGCCGACCTGTTGCAGCTGACCCGTCACCTCGACGC
GCCGCTGCGCGACCGCCTGCTCGCCCTGTGGGACGAATACGAGCGCGGCGAGTCCGCCGAAGCCCTGGCAGTGAAGGCCC
TGGACAAGCTGGAAACCCTGCTCCAGCACACCCAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTAC
GGCCGTCGCTATACCGACCGCGCACCGCTGTTCAAGACCCTGCGCGAGCTACTCGACGCCAGGACCCGACAGCGCCTCGC
AGCTCGGCGCGACGCCTAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9145.38 Da        Isoelectric Point: 4.2813

>AT197299 WP_208831960.1 NZ_CP072110:3310706-3310957 [Psychrosphaera ytuae]
MRQVLADCSASISELKKNPTALLNEADGAAIAILNHNKPAAYLVPAETYEWLMSVVDDYELAKVVEKRRSDLSNAIEVNL
DDL

Download         Length: 252 bp

>AT197299 NZ_CP095922:3465100-3465654 [Pseudomonas aeruginosa]
ATGACCGAGCCTCTCCCTTCTTCGTCCCTGGGCCCCGCCCTGCGTCGCTGGCGCCTGCTGCACCGGGTCAAGCAAACGCA
TGCCGCCGAATTGCTCGGCGTGGCGCAATCGACCATCTCGCGCTGGGAGTCCGGTACCCAGGCGCTGCTGGTGGAGGAAC
GGGCACGCCTGGAGCGTCTGCTCGGCGCCCGCCTGGAAGCCGCCGCCGACCAGGCACTGGCCCGCCTGGTCGAGGCCAAC
CCGCAACCCGTGCACCTGATCTGCGACCTCACCCATCGCCTGTTGGCCTGTTCGCCGGCACGCGCCGCGCAATTCGGCGT
GCCTCTCGGCGAACTGCTCGACCGTTCGCTGTGGCCCTATTGCAGCGAGGAAATCCTCCGCCAGGAAGCCACCCTCGAGG
AACTCGGCTGGCGCGAACTGCTGGCACCGCCGGCGCTGGAGTTCGCCAGCGGAGCGAACGCCTCGGCCATCGTGCCGATC
CGGCGCAGCCGTTGCCGCTGGACCCGCATGACCCTCTCGGACGGACGCGCGGTGCGCCTGGTGGAAACCCTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References