Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 1727907..1728463 Replicon chromosome
Accession NZ_CP072110
Organism Psychrosphaera ytuae strain MTZ26

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag J1N51_RS07605 Protein ID WP_208829990.1
Coordinates 1727907..1728182 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag J1N51_RS07610 Protein ID WP_208829992.1
Coordinates 1728185..1728463 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J1N51_RS07570 (J1N51_07570) 1723017..1723988 - 972 WP_208829978.1 integron integrase -
J1N51_RS07575 (J1N51_07575) 1724327..1724767 + 441 WP_208829980.1 hypothetical protein -
J1N51_RS07580 (J1N51_07580) 1724892..1725155 + 264 WP_208829982.1 hypothetical protein -
J1N51_RS07585 (J1N51_07585) 1725273..1725701 + 429 WP_208829984.1 hypothetical protein -
J1N51_RS07590 (J1N51_07590) 1726322..1726762 + 441 WP_208829980.1 hypothetical protein -
J1N51_RS07595 (J1N51_07595) 1726882..1727301 + 420 WP_208829986.1 hypothetical protein -
J1N51_RS07600 (J1N51_07600) 1727445..1727864 + 420 WP_208829988.1 GFA family protein -
J1N51_RS07605 (J1N51_07605) 1727907..1728182 - 276 WP_208829990.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
J1N51_RS07610 (J1N51_07610) 1728185..1728463 - 279 WP_208829992.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
J1N51_RS07615 (J1N51_07615) 1728639..1729238 + 600 WP_208829994.1 CPBP family intramembrane metalloprotease -
J1N51_RS07620 (J1N51_07620) 1729341..1729820 + 480 WP_208829996.1 hypothetical protein -
J1N51_RS07625 (J1N51_07625) 1730315..1730665 + 351 WP_208829998.1 hypothetical protein -
J1N51_RS07630 (J1N51_07630) 1730748..1731344 + 597 WP_208830000.1 hypothetical protein -
J1N51_RS07635 (J1N51_07635) 1731361..1731903 + 543 WP_208830002.1 hypothetical protein -
J1N51_RS07640 (J1N51_07640) 1731942..1732949 - 1008 WP_208830004.1 pirin family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-74)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10620.25 Da        Isoelectric Point: 4.3356

>T197298 WP_208829990.1 NZ_CP072110:c1728182-1727907 [Psychrosphaera ytuae]
VIYWEEQSLIDREKVFEFLYEFNPLAAEATDDTIEKNVEGLLLQPEMGVEREGIEGRLLIIPEISMIVSYYSDGKNIRVM
RVLHMKQKFPG

Download         Length: 276 bp

>T197298 NZ_CP095922:1820449-1821036 [Pseudomonas aeruginosa]
ATGTCGAGGAGGGCGCCCATGTTCAAGCCGCTACCGATCACCCTGCAGCGCGGAGCCTTGCGTCTCGAGCCGCTGGTGGA
AGCGGACATTCCCGAGCTGGTGAGCCTCGCCGAAGCCAACCGCGAGGCGCTGCAGTACATGGACGGACCGACGCGGCCGG
ACTGGTACCGCCAGAGCCTCGCCGAGCAGCGCGAGGGCAGGGCGTTGCCGCTCGCCGTCCGCCTCGGCGTGCAACTGGTC
GGGACCACGCGCTTCGCCGAATTCCTTCCCGCCTTGCCGGCCTGCGAGATCGGCTGGACCTGGCTCGACCAGGCCCAGCA
CGGCAGCGGCCTGAACCGCATGATCAAGTACCTGATGCTCAAGCATGCCTTCGACAACCTGCGTATGGTCCGCGTGCAGC
TCAGCACGGCGGCGAGCAACCTGCGCGCCCAGGGCGCCATCGACAAGCTCGGCGCGCAGCGCGAGGGCGTGCTGCGCAAC
CACCGGCGGCTGGCCGGCGGGCGGCTAGACGACACCTTCGTCTACAGCATCACCGACCACGAATGGCCGCAGGTCAAGGC
GGTGCTGGAAGCCAGCTTCACCGGCTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10778.13 Da        Isoelectric Point: 6.4735

>AT197298 WP_208829992.1 NZ_CP072110:c1728463-1728185 [Psychrosphaera ytuae]
MDTRIQFRIDEEVKRLAQQMAESQGRTISDACRELTEQLAEQQRQKLSHDTWLSEQVNLAFEKLETGNTKFVTHEAAKES
MAERKAKIRLRD

Download         Length: 279 bp

>AT197298 NZ_CP095922:1821103-1821957 [Pseudomonas aeruginosa]
GTGCCGGACGAGACGAGCGGAGAACACACGCATTTCTGGCGCGCCGCCGAACTGGGCGGCGTCGAACTGCTGCACGCGCG
CTATGTGGAGCAGCGCTTCGCGCCGCACGTGCACAGCAGCTTCGCCCTGGTCATCATCGAGCAGGGCGCGCAGCGCTTCC
GCCATCGTGGCGGCGAGCACCTGGCCCCGCTGGGCAGCATGGTGCTGATCAACCCCGACGAAGTGCACACCGGCTCCAAG
GCCCATGATGCCGGTTGGCTCTATCGCGGCTACTACCCGGAAATGGAACAGATCGACGGGATTCTCGACGAGCTGGAAAT
CCATCATGGCGGCGTGCCGCGCTTCGCCGACAGCGTGATCCACGACCAGCCCCTGGCACGCGCCTTCGTCCACTTGCACC
GCCTGCTGGCCGAGCATGCCGACAGCCTGGAAACCCAGACCCGCTGGCGTGAGACGGTGCTCGCCCTGTTCCGTCGCCAC
GCCCGCCTGCCAGAAGCGCCGAAGGCCGGGCAGGAGCCGTTGGCGGTGGCCCGTGCCCGCGAACTGCTGGCGGCGCGGTT
GCTCGATCCGCCTTCGCTGGAGGAACTGGCGGCGGCGGTCAATCTGTCCCCGTTCCATTTTGCCCGGGTCTTCCGTCGCG
CCACCGGCATGCCGCCCCACGCCTGGCTCAGGCAGCGCCGCCTGGAGCAGGCCAGGGCACTGCTCAAGAGCGGCCGGGCG
CCGCTGGAGGTGGCCCTGGAGCTGGGCTTCGCCGACCAGAGCCACCTCGGTCGCCAGTTCAAGCAGGCCTACGGCGTGGC
ACCGGGTGAATACCGCTCGGCCTGCGCGCGCTCATCCTTGACGATCTACGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References