Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 3415650..3417370 Replicon chromosome
Accession NZ_CP071955
Organism Xanthomonas fragariae strain YL19

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag J5I97_RS16250 Protein ID WP_208587619.1
Coordinates 3415650..3416300 (+) Length 217 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag J5I97_RS16255 Protein ID WP_238135557.1
Coordinates 3416339..3417370 (+) Length 344 a.a.

Genomic Context

J5I97_RS16225J5I97_RS16245J5I97_RS16250J5I97_RS16255J5I97_RS16265J5I97_RS16275J5I97_RS16280J5I97_RS16230J5I97_RS16240J5I97_RS16260J5I97_RS16270J5I97_RS16285
Location: 3411030..3411701 (672 bp)
Type: Others
Protein ID: WP_208587614.1
Location: 3414404..3415330 (927 bp)
Type: Others
Protein ID: WP_208587617.1
Location: 3415650..3416300 (651 bp)
Type: Toxin
Protein ID: WP_208587619.1
Location: 3416339..3417370 (1032 bp)
Type: Antitoxin
Protein ID: WP_238135557.1
Location: 3418122..3418430 (309 bp)
Type: Others
Protein ID: Protein_3039
Location: 3419689..3419929 (241 bp)
Type: Others
Protein ID: Protein_3041
Location: 3419995..3420333 (339 bp)
Type: Others
Protein ID: WP_208587623.1
Location: 3411806..3413152 (1347 bp)
Type: Others
Protein ID: WP_208587615.1
Location: 3413567..3414358 (792 bp)
Type: Others
Protein ID: WP_208587616.1
Location: 3417477..3418037 (561 bp)
Type: Others
Protein ID: WP_208587621.1
Location: 3418608..3419423 (816 bp)
Type: Others
Protein ID: WP_208587622.1
Location: 3420387..3421217 (831 bp)
Type: Others
Protein ID: WP_208587624.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
J5I97_RS162253411030..3411701+672WP_208587614.1methyltransferase-
J5I97_RS162303411806..3413152-1347WP_208587615.1IS701 family transposase-
J5I97_RS162403413567..3414358-792WP_208587616.1polysaccharide deacetylase family protein-
J5I97_RS162453414404..3415330+927WP_208587617.1Grx4 family monothiol glutaredoxin-
J5I97_RS162503415650..3416300+651WP_208587619.1DUF4433 domain-containing proteinToxin
J5I97_RS162553416339..3417370+1032WP_238135557.1macro domain-containing proteinAntitoxin
J5I97_RS162603417477..3418037-561WP_208587621.1DUF924 family protein-
J5I97_RS162653418122..3418430+309Protein_3039amidohydrolase-
J5I97_RS162703418608..3419423-816WP_208587622.1cellulase-
J5I97_RS162753419689..3419929+241Protein_3041DegV family protein-
J5I97_RS162803419995..3420333+339WP_208587623.1hypothetical protein-
J5I97_RS162853420387..3421217-831WP_208587624.1S-formylglutathione hydrolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(16-216)

Antitoxin

Macro domain

(5-117)


Sequences

Toxin        


Download         Length: 217 a.a.        Molecular weight: 24926.47 Da        Isoelectric Point: 8.4986

>T197186 WP_208587619.1 NZ_CP071955:3415650-3416300 [Xanthomonas fragariae]
MSRRYPNLNPDKALIWRIVHRDNLPWIMDNGLHCGNGGVQSPGWVSIGNPELIAKRANHPVPLAPGGFLNDYVPFYFTPF
SPMLRNIHTGWGGIQRRSNEEIVILVSSLHHVAARGWLFLFTDSHADYQLTTFHSDLANLCKIDWPLLQARDFRRDQEDP
AKFERYQAEALVHRHLPIDGLRGIVGYTDDMKLSIERQLKARNLTLPVHARPEWYF

Download         Length: 651 bp

>T197186 NZ_CP095770:c5861382-5861200 [Pseudomonas aeruginosa]
ATGCGGAGTAGGGAAGTGATTGATTTGCTGTTGGAGGATGGCTGGTATGAAGTGGCGGTGAAAGGTAGCCACCACCAGTT
CAAACATCCTTCAAAGCCTGGAAAGGTGACGGTTCAACATCCGTCCTCGACGATACCGAAAGGAACCCTGAACAACATAC
TGAAACAAGCCGGCCTCAAGTGA

Antitoxin


Download         Length: 344 a.a.        Molecular weight: 38126.74 Da        Isoelectric Point: 5.3103

>AT197186 WP_238135557.1 NZ_CP071955:3416339-3417370 [Xanthomonas fragariae]
VEALVNTVNTVGVMGKGIALMFKERFNENFLRYAAACKAKQVRTGKVFVTEANELDGPRWIINFPTKQHWRGDSRIEWIT
EGLQDLRLFLIENKVGSIAIPPLGAGNGGLDWADVRPLIEESLAGLDTDIFVFEPTLKYQNVAKRSGVETLTPARALIAE
LVRRYWVLGVECSLLEIQKLAWFLERNIERAGLPTLDLRFAPNKYGPYADRLRHLLDGLDGSYLHCDKRIGDADPIDVIW
FDDARKSVVHAYLKSEAKQYAPALEATAALIDGFETPFGMELLATVDWLIAQGGVCPQVADMREGIRNWPGGADAAVRKD
RLFDDRALGIALERLTSSASAVT

Download         Length: 1032 bp

>AT197186 NZ_CP095770:c5861172-5860768 [Pseudomonas aeruginosa]
ATGAAATTCCCCGTGGTGTTACACAAAGACCCTGATTCTGACTATGGCGTGACTGTGCCCGATGTGCCGGGTTGCTTCTC
TGCCGGCGCTACGGTGTCCGAGGCCCTGGCCAATGTAGAAGAGGCGCTGGCCTTGCACTTCGAAGGCTTGGTTACGGACG
GCGAAGAGCTACCCCAGCCGCAGGACGTTGACGCCCATATGAAGAATCCGGACTTCGAAGGTGGCGTATGGGCGGTGGTT
GACTTCGACGTGACCCCGTACCTGGGCAAGGCCGTACGCTTTAATGCGACGCTCCCGGAACACCTTCTGCAGCGGATCGA
TGAGCGCGTGAAGGTGGATAAGCGCTATCAGTCTCGGTCGGGCTTTCTGGCAACAGCGGCGATGCGCGAACTGTCAGTGG
CGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References