Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 1535309..1535979 Replicon chromosome
Accession NZ_CP071955
Organism Xanthomonas fragariae strain YL19

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag J5I97_RS07170 Protein ID WP_208590583.1
Coordinates 1535560..1535979 (+) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag J5I97_RS07165 Protein ID WP_208590581.1
Coordinates 1535309..1535563 (+) Length 85 a.a.

Genomic Context

J5I97_RS07150J5I97_RS07160J5I97_RS07165J5I97_RS07170J5I97_RS19865J5I97_RS19870J5I97_RS07180J5I97_RS07185J5I97_RS07190J5I97_RS07205J5I97_RS07140J5I97_RS07155J5I97_RS07195J5I97_RS07200
Location: 1532935..1533468 (534 bp)
Type: Others
Protein ID: Protein_1337
Location: 1534616..1534897 (282 bp)
Type: Others
Protein ID: WP_002805735.1
Location: 1535309..1535563 (255 bp)
Type: Antitoxin
Protein ID: WP_208590581.1
Location: 1535560..1535979 (420 bp)
Type: Toxin
Protein ID: WP_208590583.1
Location: 1536312..1536419 (108 bp)
Type: Others
Protein ID: WP_238135662.1
Location: 1536658..1536753 (96 bp)
Type: Others
Protein ID: Protein_1343
Location: 1536903..1537133 (231 bp)
Type: Others
Protein ID: Protein_1344
Location: 1537198..1538169 (972 bp)
Type: Others
Protein ID: WP_208590244.1
Location: 1538298..1538878 (581 bp)
Type: Others
Protein ID: Protein_1346
Location: 1539734..1540366 (633 bp)
Type: Others
Protein ID: WP_208590599.1
Location: 1530570..1531681 (1112 bp)
Type: Others
Protein ID: Protein_1335
Location: 1533552..1534046 (495 bp)
Type: Others
Protein ID: WP_208590579.1
Location: 1538971..1539345 (375 bp)
Type: Others
Protein ID: WP_208590590.1
Location: 1539362..1539667 (306 bp)
Type: Others
Protein ID: WP_208590591.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
J5I97_RS071401530570..1531681-1112Protein_1335IS3 family transposase-
J5I97_RS071501532935..1533468+534Protein_1337transposase-
J5I97_RS071551533552..1534046-495WP_208590579.1hypothetical protein-
J5I97_RS071601534616..1534897+282WP_002805735.1TraK family protein-
J5I97_RS071651535309..1535563+255WP_208590581.1Arc family DNA-binding proteinAntitoxin
J5I97_RS071701535560..1535979+420WP_208590583.1type II toxin-antitoxin system VapC family toxinToxin
J5I97_RS198651536312..1536419+108WP_238135662.1helix-turn-helix domain-containing protein-
J5I97_RS198701536658..1536753+96Protein_1343IS30 family transposase-
J5I97_RS071801536903..1537133+231Protein_1344transposase-
J5I97_RS071851537198..1538169+972WP_208590244.1IS5 family transposase-
J5I97_RS071901538298..1538878+581Protein_1346IS5/IS1182 family transposase-
J5I97_RS071951538971..1539345-375WP_208590590.1Mth938-like domain-containing protein-
J5I97_RS072001539362..1539667-306WP_208590591.1ribosome assembly RNA-binding protein YhbY-
J5I97_RS072051539734..1540366+633WP_208590599.123S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideIScluster/Tn--1529298..15388279529


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-123)

Antitoxin

Arc-like DNA binding domain

(9-46)


Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 14881.06 Da        Isoelectric Point: 4.6936

>T197185 WP_208590583.1 NZ_CP071955:1535560-1535979 [Xanthomonas fragariae]
MIVLDTNVVSEAMKPEPNPAVRAWLNEQVAETLYLSSVTLAELLFGIGALPNGKRKKGLGEALDGLLELFSERVLMFDTE
AARNYAELAVKARTAGKGFPTPDGYIGAIAASKGFIVATRDTSPFEAAGLTVINPWNNQ

Download         Length: 420 bp

>T197185 NZ_CP095770:c5220075-5219320 [Pseudomonas aeruginosa]
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGTTGGGGG
TCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9466.78 Da        Isoelectric Point: 5.7425

>AT197185 WP_208590581.1 NZ_CP071955:1535309-1535563 [Xanthomonas fragariae]
MAILTVRNVPDEVHRALRLRAAEHGRSTEAEVREILESAVKSEKRVRMGDALAELGRQVGLTNDDFAVLDQVRDKVPAEP
MRFE

Download         Length: 255 bp

>AT197185 NZ_CP095770:c5220578-5220210 [Pseudomonas aeruginosa]
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCTGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTGGATGCGATCCGCGGCAAGGTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
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References