Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tad-ata/COG5606-COG4679
Location 1387829..1388508 Replicon chromosome
Accession NZ_CP071955
Organism Xanthomonas fragariae strain YL19

Toxin (Protein)


Gene name tad Uniprot ID -
Locus tag J5I97_RS06530 Protein ID WP_208590308.1
Coordinates 1388146..1388508 (-) Length 121 a.a.

Antitoxin (Protein)


Gene name ata Uniprot ID -
Locus tag J5I97_RS06525 Protein ID WP_208590306.1
Coordinates 1387829..1388146 (-) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J5I97_RS19835 1384098..1384388 - 291 WP_238135655.1 hypothetical protein -
J5I97_RS06510 1384824..1385629 + 806 WP_208591587.1 IS5 family transposase -
J5I97_RS06515 1385654..1385968 + 315 WP_238135656.1 hypothetical protein -
J5I97_RS06520 1386296..1387783 + 1488 WP_208590304.1 site-specific integrase -
J5I97_RS06525 1387829..1388146 - 318 WP_208590306.1 helix-turn-helix transcriptional regulator Antitoxin
J5I97_RS06530 1388146..1388508 - 363 WP_208590308.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
J5I97_RS06540 1390331..1392496 + 2166 WP_208587611.1 type I secretion system permease/ATPase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - - 1377343..1390078 12735


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(15-108)

Antitoxin

HigA2-like, helix-turn-helix domain

(12-91)


Sequences

Toxin        


Download         Length: 121 a.a.        Molecular weight: 13438.29 Da        Isoelectric Point: 6.4748

>T197184 WP_208590308.1 NZ_CP071955:c1388508-1388146 [Xanthomonas fragariae]
MPEKPLIWVGSSRRDLAELPEDVKDTFGFALSEAQNGRTHVGAKLMAKGSLKGKGIYEVVDDYDGDTFRAVYTVEIEDAI
YALHCFQKKSKNGRETPKSDIDLIESRYQTALLDAKKVKI

Download         Length: 363 bp

>T197184 NZ_CP095770:4196350-4196928 [Pseudomonas aeruginosa]
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGCTCCGCGCA
CACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTTTGCCTGATGGCACTGGCCTTCGAGGACCAAC
TGGCCGGCCTGGACCTCGGCAAGGTTCTGCGCATGTGCGTGGTCCACGACCTCGGCGAAGCGATCCACGGCGACATCCCC
GCCGTCGAGCAAGCGGCGCACCCGGACAAGGGCGAACAGGAACGCGCCGACCTGTTGCAGCTGACCCGTCATCTGGACAC
GCCGCTGCGCGATCGCCTGCTCGCCCTGTGGGACGAATACGAGCGCGGCGAGACCGCCGAAGCCCTGGCAGTGAAAGCGC
TGGACAAGCTGGAAACCCTGCTCCAGCACACCCAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTAC
GGCCGTCGCTATACCGACCGCGCACCGCTGTTCAAGACCCTGCGCGAGCTACTCGACGCCAGGACCCGACAGCGCCTCGC
AGCTCGGCGCGACGCCTAG

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11121.71 Da        Isoelectric Point: 4.8040

>AT197184 WP_208590306.1 NZ_CP071955:c1388146-1387829 [Xanthomonas fragariae]
MSIEIEVSSGNIYSDLGYSNAEEMKIKAALAGKISAFIADAHLTQAQAAAHMGISQAKVSEMLRGRFRGISEAKMMECLK
SFGQNVTISVTPAEVPDEAEISVAA

Download         Length: 318 bp

>AT197184 NZ_CP095770:4195707-4196261 [Pseudomonas aeruginosa]
ATGACCGAGCCTCTCCCTTCTTCGTCCCTGGGCCCCGCCCTGCGTCGCTGGCGCCTGCTGCATCGGGTCAAGCAAACGCA
TGCCGCCGAATTGCTCGGCGTGGCGCAATCGACCATCTCGCGCTGGGAGTCCGGTACCCAGGCGCTGCTGGTGGAGGAAC
GGGCACGCCTGGAGCGTCTGCTCGGCGCCCGCCTGGAAGCCGCCGCCGACCAGGCACTGGCCCGCCTGGTCGAGGCCAAC
CCGCAACCCGTGCACCTGATCTGCGACCTCACCCATCGCCTGTTGGCCTGTTCGCCGGCACGCGCCGCGCAATTCGGCGT
GCCTCTCGGCGAACTGCTCGACCGTTCGCTGTGGCCCTATTGCAGCGAGGAAATCCTCCGCCAGGAAGCCACCCTCGAGG
AACTCGGCTGGCGCGAACTGCTGGCACCGCCGGCGCTGGAGTTCGCCAGCGGAGCGAACGCCTCGGCCATCGTGCCGATC
CGGCGCAGCCGTTGCCGCTGGACCCGCATGACCCTCTCGGACGGACGCGCGGTGCGCCTGGTGGAAACCCTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References