Detailed information of TA system TA197184

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): tad-ata/COG5606-COG4679
• Location: 1387829..1388508
• Replicon: chromosome
• Accession: NZ_CP071955
• Organism: Xanthomonas fragariae strain YL19

Toxin (Protein)

• Gene name: tad
• Uniprot ID: -
• Locus tag: J5I97_RS06530
• Protein ID: WP_208590308.1
• Coordinates: 1388146..1388508 (-)
• Length: 121 a.a.

Antitoxin (Protein)

• Gene name: ata
• Uniprot ID: -
• Locus tag: J5I97_RS06525
• Protein ID: WP_208590306.1
• Coordinates: 1387829..1388146 (-)
• Length: 106 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
J5I97_RS19835	1384098..1384388	-	291	WP_238135655.1	hypothetical protein	-
J5I97_RS06510	1384824..1385629	+	806	WP_208591587.1	IS5 family transposase	-
J5I97_RS06515	1385654..1385968	+	315	WP_238135656.1	hypothetical protein	-
J5I97_RS06520	1386296..1387783	+	1488	WP_208590304.1	site-specific integrase	-
J5I97_RS06525	1387829..1388146	-	318	WP_208590306.1	helix-turn-helix transcriptional regulator	Antitoxin
J5I97_RS06530	1388146..1388508	-	363	WP_208590308.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
J5I97_RS06540	1390331..1392496	+	2166	WP_208587611.1	type I secretion system permease/ATPase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	IScluster/Tn	-	-	1377343..1390078	12735

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-like (15-108)

Antitoxin

• HigA2-like, helix-turn-helix domain (12-91)

Sequences

Toxin

Protein

• Length: 121 a.a.
• Molecular weight: 13438.29 Da
• Isoelectric Point: 6.4748

>T197184 WP_208590308.1 NZ_CP071955:c1388508-1388146 [Xanthomonas fragariae]
MPEKPLIWVGSSRRDLAELPEDVKDTFGFALSEAQNGRTHVGAKLMAKGSLKGKGIYEVVDDYDGDTFRAVYTVEIEDAI
YALHCFQKKSKNGRETPKSDIDLIESRYQTALLDAKKVKI

Nucleotide

• Length: 363 bp

>T197184 NZ_CP095770:4196350-4196928 [Pseudomonas aeruginosa]
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGCTCCGCGCA
CACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTTTGCCTGATGGCACTGGCCTTCGAGGACCAAC
TGGCCGGCCTGGACCTCGGCAAGGTTCTGCGCATGTGCGTGGTCCACGACCTCGGCGAAGCGATCCACGGCGACATCCCC
GCCGTCGAGCAAGCGGCGCACCCGGACAAGGGCGAACAGGAACGCGCCGACCTGTTGCAGCTGACCCGTCATCTGGACAC
GCCGCTGCGCGATCGCCTGCTCGCCCTGTGGGACGAATACGAGCGCGGCGAGACCGCCGAAGCCCTGGCAGTGAAAGCGC
TGGACAAGCTGGAAACCCTGCTCCAGCACACCCAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTAC
GGCCGTCGCTATACCGACCGCGCACCGCTGTTCAAGACCCTGCGCGAGCTACTCGACGCCAGGACCCGACAGCGCCTCGC
AGCTCGGCGCGACGCCTAG

Antitoxin

Protein

• Length: 106 a.a.
• Molecular weight: 11121.71 Da
• Isoelectric Point: 4.8040

>AT197184 WP_208590306.1 NZ_CP071955:c1388146-1387829 [Xanthomonas fragariae]
MSIEIEVSSGNIYSDLGYSNAEEMKIKAALAGKISAFIADAHLTQAQAAAHMGISQAKVSEMLRGRFRGISEAKMMECLK
SFGQNVTISVTPAEVPDEAEISVAA

Nucleotide

• Length: 318 bp

>AT197184 NZ_CP095770:4195707-4196261 [Pseudomonas aeruginosa]
ATGACCGAGCCTCTCCCTTCTTCGTCCCTGGGCCCCGCCCTGCGTCGCTGGCGCCTGCTGCATCGGGTCAAGCAAACGCA
TGCCGCCGAATTGCTCGGCGTGGCGCAATCGACCATCTCGCGCTGGGAGTCCGGTACCCAGGCGCTGCTGGTGGAGGAAC
GGGCACGCCTGGAGCGTCTGCTCGGCGCCCGCCTGGAAGCCGCCGCCGACCAGGCACTGGCCCGCCTGGTCGAGGCCAAC
CCGCAACCCGTGCACCTGATCTGCGACCTCACCCATCGCCTGTTGGCCTGTTCGCCGGCACGCGCCGCGCAATTCGGCGT
GCCTCTCGGCGAACTGCTCGACCGTTCGCTGTGGCCCTATTGCAGCGAGGAAATCCTCCGCCAGGAAGCCACCCTCGAGG
AACTCGGCTGGCGCGAACTGCTGGCACCGCCGGCGCTGGAGTTCGCCAGCGGAGCGAACGCCTCGGCCATCGTGCCGATC
CGGCGCAGCCGTTGCCGCTGGACCCGCATGACCCTCTCGGACGGACGCGCGGTGCGCCTGGTGGAAACCCTCTGA