Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2232426..2232697 | Replicon | chromosome |
| Accession | NZ_CP071954 | ||
| Organism | Escherichia coli strain SB0258h1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2232556..2232659 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2232426..2232697 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5X85_RS10780 | 2228981..2229643 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J5X85_RS10785 | 2229667..2230323 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J5X85_RS10790 | 2230425..2230655 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J5X85_RS10795 | 2230794..2231168 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J5X85_RS10800 | 2231172..2232044 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| J5X85_RS10805 | 2232057..2232398 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2232426..2232697 | - | 272 | - | - | Antitoxin |
| - | 2232556..2232659 | + | 104 | - | - | Toxin |
| J5X85_RS10810 | 2232794..2233450 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| J5X85_RS10815 | 2233451..2233642 | - | 192 | WP_001296140.1 | YebW family protein | - |
| J5X85_RS10820 | 2233747..2233983 | - | 237 | WP_001295499.1 | YebV family protein | - |
| J5X85_RS10825 | 2234101..2235540 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T197162 NZ_CP071954:2232556-2232659 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT197162 NZ_CP071954:c2232697-2232426 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
