Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4459274..4459475 | Replicon | chromosome |
| Accession | NZ_CP071876 | ||
| Organism | Enterobacter hormaechei strain GX4-8L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4459367..4459470 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4459274..4459475 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4O68_RS21395 (J4O68_21385) | 4455803..4456465 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| J4O68_RS21400 (J4O68_21390) | 4456490..4457140 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| J4O68_RS21405 (J4O68_21395) | 4457260..4457490 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| J4O68_RS21410 (J4O68_21400) | 4457628..4457999 | + | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| J4O68_RS21415 (J4O68_21405) | 4458001..4458870 | + | 870 | WP_047054929.1 | copper homeostasis membrane protein CopD | - |
| J4O68_RS21420 (J4O68_21410) | 4458887..4459225 | + | 339 | WP_045343594.1 | YebY family protein | - |
| - | 4459274..4459475 | - | 202 | - | - | Antitoxin |
| J4O68_RS21425 (J4O68_21415) | 4459351..4459548 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 4459367..4459470 | + | 104 | - | - | Toxin |
| J4O68_RS21430 (J4O68_21420) | 4459594..4460574 | - | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| J4O68_RS21435 (J4O68_21425) | 4460742..4461386 | + | 645 | WP_125321237.1 | protein-serine/threonine phosphatase | - |
| J4O68_RS21440 (J4O68_21430) | 4461421..4461660 | - | 240 | WP_003859885.1 | YebV family protein | - |
| J4O68_RS21445 (J4O68_21435) | 4461767..4463215 | - | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T197106 NZ_CP071876:4459367-4459470 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT197106 NZ_CP071876:c4459475-4459274 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
