Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3925620..3925771 | Replicon | chromosome |
| Accession | NZ_CP071861 | ||
| Organism | Enterobacter cloacae strain GX1Z-1L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3925633..3925736 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3925620..3925771 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4G41_RS19025 (J4G41_19005) | 3921895..3923337 | + | 1443 | WP_058682207.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| J4G41_RS19030 (J4G41_19010) | 3923444..3923683 | + | 240 | WP_013096113.1 | YebV family protein | - |
| J4G41_RS19035 (J4G41_19015) | 3923717..3924361 | - | 645 | WP_058682206.1 | protein-serine/threonine phosphatase | - |
| J4G41_RS19040 (J4G41_19020) | 3924528..3925469 | + | 942 | WP_038419912.1 | VirK/YbjX family protein | - |
| - | 3925620..3925771 | + | 152 | - | - | Antitoxin |
| - | 3925633..3925736 | - | 104 | - | - | Toxin |
| J4G41_RS19045 (J4G41_19025) | 3925877..3926215 | - | 339 | WP_013096105.1 | YebY family protein | - |
| J4G41_RS19050 (J4G41_19030) | 3926232..3927101 | - | 870 | WP_058682205.1 | copper homeostasis membrane protein CopD | - |
| J4G41_RS19055 (J4G41_19035) | 3927103..3927474 | - | 372 | WP_020690820.1 | CopC domain-containing protein YobA | - |
| J4G41_RS19060 (J4G41_19040) | 3927612..3927842 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| J4G41_RS19065 (J4G41_19045) | 3927952..3928602 | + | 651 | WP_023620454.1 | carbon-nitrogen hydrolase family protein | - |
| J4G41_RS19070 (J4G41_19050) | 3928626..3929288 | + | 663 | WP_020690817.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T197072 NZ_CP071861:c3925736-3925633 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT197072 NZ_CP071861:3925620-3925771 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
