Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /DUF1778(antitoxin) |
Location | 1004120..1004919 | Replicon | chromosome |
Accession | NZ_CP071849 | ||
Organism | Vibrio sp. SCSIO 43136 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | J4N39_RS19410 | Protein ID | WP_252023992.1 |
Coordinates | 1004120..1004653 (-) | Length | 178 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | J4N39_RS19415 | Protein ID | WP_252023994.1 |
Coordinates | 1004650..1004919 (-) | Length | 90 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
J4N39_RS19375 (J4N39_19385) | 999436..1001277 | + | 1842 | WP_252023983.1 | M3 family metallopeptidase | - |
J4N39_RS19380 (J4N39_19390) | 1001352..1001978 | - | 627 | WP_252023984.1 | LysE family translocator | - |
J4N39_RS19385 (J4N39_19395) | 1002075..1002536 | - | 462 | WP_252023985.1 | RidA family protein | - |
J4N39_RS19390 (J4N39_19400) | 1002593..1002970 | - | 378 | WP_252023986.1 | hypothetical protein | - |
J4N39_RS19395 (J4N39_19405) | 1002967..1003308 | - | 342 | WP_252023987.1 | DUF4144 domain-containing protein | - |
J4N39_RS19400 (J4N39_19410) | 1003482..1003703 | + | 222 | WP_252023988.1 | ParD-like family protein | - |
J4N39_RS19405 (J4N39_19415) | 1003696..1003986 | + | 291 | WP_252023990.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
J4N39_RS19410 (J4N39_19420) | 1004120..1004653 | - | 534 | WP_252023992.1 | GNAT family N-acetyltransferase | Toxin |
J4N39_RS19415 (J4N39_19425) | 1004650..1004919 | - | 270 | WP_252023994.1 | DUF1778 domain-containing protein | Antitoxin |
J4N39_RS19420 (J4N39_19430) | 1005153..1005635 | - | 483 | WP_252023995.1 | tetratricopeptide repeat protein | - |
J4N39_RS19425 (J4N39_19435) | 1005831..1006115 | + | 285 | WP_252023997.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
J4N39_RS19430 (J4N39_19440) | 1006102..1006371 | + | 270 | WP_252023999.1 | type II toxin-antitoxin system YafQ family toxin | - |
J4N39_RS19435 (J4N39_19445) | 1006457..1007405 | + | 949 | Protein_903 | IS110 family transposase | - |
J4N39_RS19440 (J4N39_19450) | 1007784..1008098 | - | 315 | WP_252024001.1 | DNA-binding transcriptional regulator | - |
J4N39_RS19445 (J4N39_19455) | 1008085..1008417 | - | 333 | WP_252024003.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
J4N39_RS19450 (J4N39_19460) | 1008612..1009229 | - | 618 | WP_252024005.1 | LysE family translocator | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | flank | IS/Tn | - | - | 1007028..1007405 | 377 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 178 a.a. Molecular weight: 20177.46 Da Isoelectric Point: 9.1580
>T197045 WP_252023992.1 NZ_CP071849:c1004653-1004120 [Vibrio sp. SCSIO 43136]
VSWGKEFVELSKSSHDRNSFDCGEQELNMFIRTQAAKHMQAGISRTMVLPSTQPLLNQKFAICAFYSVAPSSISRETLPT
HMAKKLPRYPVPVFLLAQLAVHKEFHGSGLGKISLIRSLKYLWEVNHHMRAYAIVVDCLTDSAQAFYTKFGFEVLCEHNG
HIRMFLPMKTVEQLFTQ
VSWGKEFVELSKSSHDRNSFDCGEQELNMFIRTQAAKHMQAGISRTMVLPSTQPLLNQKFAICAFYSVAPSSISRETLPT
HMAKKLPRYPVPVFLLAQLAVHKEFHGSGLGKISLIRSLKYLWEVNHHMRAYAIVVDCLTDSAQAFYTKFGFEVLCEHNG
HIRMFLPMKTVEQLFTQ
Download Length: 534 bp
>T197045 NZ_CP095533:c4205431-4205096 [Escherichia coli]
ATGGTAAGCCGATACGTACCCGATATGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCTGG
ACATCGTCCGGCTGTTGTCCTGAGTCCGTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTTTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGT
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTACTGATTGGGTAG
ATGGTAAGCCGATACGTACCCGATATGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCTGG
ACATCGTCCGGCTGTTGTCCTGAGTCCGTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTTTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGT
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTACTGATTGGGTAG
Antitoxin
Download Length: 90 a.a. Molecular weight: 9822.15 Da Isoelectric Point: 4.3697
>AT197045 WP_252023994.1 NZ_CP071849:c1004919-1004650 [Vibrio sp. SCSIO 43136]
MATARLDIRLDEEIKAKAEKASALLGLKSLTEYVVRLMDEDSTHVIEEHESIVVKDNVFDEFVAACDKAKAPNSALLEAV
QFTDESGIK
MATARLDIRLDEEIKAKAEKASALLGLKSLTEYVVRLMDEDSTHVIEEHESIVVKDNVFDEFVAACDKAKAPNSALLEAV
QFTDESGIK
Download Length: 270 bp
>AT197045 NZ_CP095533:c4205679-4205431 [Escherichia coli]
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGAGAGCCGAAAGATAAGGAA
GTCTGGTAA
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGAGAGCCGAAAGATAAGGAA
GTCTGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|
Antitoxin
Source | ID | Structure |
---|