Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE(toxin) |
| Location | 1353919..1354478 | Replicon | chromosome |
| Accession | NZ_CP071845 | ||
| Organism | Vibrio sp. SCSIO 43139 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A7H5CQX1 |
| Locus tag | J4N41_RS06290 | Protein ID | WP_025796573.1 |
| Coordinates | 1353919..1354197 (-) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | J4N41_RS06295 | Protein ID | WP_239871581.1 |
| Coordinates | 1354194..1354478 (-) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4N41_RS06260 (J4N41_06225) | 1349374..1349829 | + | 456 | Protein_1202 | GNAT family N-acetyltransferase | - |
| J4N41_RS06265 (J4N41_06230) | 1350501..1351442 | + | 942 | WP_193275176.1 | DUF4263 domain-containing protein | - |
| J4N41_RS06270 (J4N41_06235) | 1351467..1351559 | + | 93 | WP_193275177.1 | DUF3265 domain-containing protein | - |
| J4N41_RS06275 (J4N41_06240) | 1351617..1352303 | + | 687 | WP_252036381.1 | hypothetical protein | - |
| J4N41_RS06280 (J4N41_06245) | 1352573..1353079 | - | 507 | WP_252036382.1 | HNH endonuclease signature motif containing protein | - |
| J4N41_RS06285 (J4N41_06250) | 1353509..1353745 | + | 237 | WP_252036383.1 | hypothetical protein | - |
| J4N41_RS06290 (J4N41_06255) | 1353919..1354197 | - | 279 | WP_025796573.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| J4N41_RS06295 (J4N41_06260) | 1354194..1354478 | - | 285 | WP_239871581.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| J4N41_RS06300 (J4N41_06265) | 1354691..1355008 | + | 318 | WP_252036384.1 | hypothetical protein | - |
| J4N41_RS06305 (J4N41_06270) | 1355288..1355509 | + | 222 | WP_004400149.1 | VF530 family protein | - |
| J4N41_RS06310 (J4N41_06275) | 1355956..1356102 | + | 147 | WP_252036385.1 | hypothetical protein | - |
| J4N41_RS06315 (J4N41_06280) | 1356112..1356441 | + | 330 | WP_252036386.1 | hypothetical protein | - |
| J4N41_RS06320 (J4N41_06285) | 1356578..1357384 | + | 807 | WP_252036387.1 | deaminase | - |
| J4N41_RS06325 (J4N41_06290) | 1357874..1358032 | + | 159 | WP_252036388.1 | hypothetical protein | - |
| J4N41_RS06330 (J4N41_06295) | 1358039..1358578 | + | 540 | WP_252036389.1 | hypothetical protein | - |
| J4N41_RS06335 (J4N41_06300) | 1358714..1359031 | + | 318 | WP_252036390.1 | CPCC family cysteine-rich protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1303073..1429922 | 126849 | |
| - | inside | Integron | - | - | 1302066..1428786 | 126720 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10916.54 Da Isoelectric Point: 4.3697
>T197031 WP_025796573.1 NZ_CP071845:c1354197-1353919 [Vibrio sp. SCSIO 43139]
MILWEEESLNDREKIFEFLYDFNPEAADKTDDIIEAKVENLLEQPHMGVQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPEAADKTDDIIEAKVENLLEQPHMGVQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T197031 NZ_CP095533:841181-841531 [Escherichia coli]
ATGGTAAAGAAAAGTGAATTTGAACGGGGAGACATTGTGCTGGTTGGCTTTGATCCAGCAAGCGGCCATGAACAGCAAGG
TGCTGGTCGACCTGCGCTTGTGCTCTCCGTTCAAGCCTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGG
GCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTACACGGCGTGGTGCTGGTG
AATCAGGTGCGGATGATGGATCTACGCGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGGTGAGGTGGTGGAAGAGGC
GTTATTACGTTTGCAGGCGGTGGTGGAATAA
ATGGTAAAGAAAAGTGAATTTGAACGGGGAGACATTGTGCTGGTTGGCTTTGATCCAGCAAGCGGCCATGAACAGCAAGG
TGCTGGTCGACCTGCGCTTGTGCTCTCCGTTCAAGCCTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGG
GCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTACACGGCGTGGTGCTGGTG
AATCAGGTGCGGATGATGGATCTACGCGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGGTGAGGTGGTGGAAGAGGC
GTTATTACGTTTGCAGGCGGTGGTGGAATAA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10985.32 Da Isoelectric Point: 8.0498
>AT197031 WP_239871581.1 NZ_CP071845:c1354478-1354194 [Vibrio sp. SCSIO 43139]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLADQQRKTLSHDAWLTEQINLAFEKFDSGKATFIDHESAKSR
MDERKAKIRNRGKL
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLADQQRKTLSHDAWLTEQINLAFEKFDSGKATFIDHESAKSR
MDERKAKIRNRGKL
Download Length: 285 bp
>AT197031 NZ_CP095533:840936-841187 [Escherichia coli]
ATGCGTATTACCATAAAAAAATGGGGGAACAGTTCAGGTATGGTCATTCCTAATGTTGTGATGAAAGAACTTAACTTACG
GCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATG
AACTGCTGGCACAGTGTGACATGAACGCCACGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCCTGCGGGTGAC
GAAATATGGTAA
ATGCGTATTACCATAAAAAAATGGGGGAACAGTTCAGGTATGGTCATTCCTAATGTTGTGATGAAAGAACTTAACTTACG
GCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATG
AACTGCTGGCACAGTGTGACATGAACGCCACGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCCTGCGGGTGAC
GAAATATGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|