Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2072540..2072686 | Replicon | chromosome |
| Accession | NZ_CP071802 | ||
| Organism | Yersinia ruckeri strain KMM821 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2072544..2072637 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2072540..2072686 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YR821_RS09310 (YR821_1938) | 2068333..2068962 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| YR821_RS09315 (YR821_1939) | 2069169..2069855 | + | 687 | WP_004721715.1 | hypothetical protein | - |
| YR821_RS09320 (YR821_1940) | 2070596..2071741 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| YR821_RS09325 (YR821_1941) | 2071860..2072468 | + | 609 | WP_004721720.1 | tyrosine-type recombinase/integrase | - |
| - | 2072540..2072686 | + | 147 | - | - | Antitoxin |
| - | 2072544..2072637 | - | 94 | - | - | Toxin |
| YR821_RS09330 (YR821_1942) | 2072796..2073137 | - | 342 | WP_004721721.1 | YebY family protein | - |
| YR821_RS09335 (YR821_1943) | 2073232..2074116 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| YR821_RS09340 (YR821_1944) | 2074118..2074504 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| YR821_RS09345 (YR821_1945) | 2074909..2075424 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| YR821_RS09350 (YR821_1947) | 2075827..2076057 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| YR821_RS09355 (YR821_1948) | 2076180..2077130 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T196955 NZ_CP071802:c2072637-2072544 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT196955 NZ_CP071802:2072540-2072686 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
