Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955945..1956089 | Replicon | chromosome |
| Accession | NZ_CP071734 | ||
| Organism | Klebsiella variicola strain KGB_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1955981..1956083 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955945..1956089 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGB1_RS09555 (KGB1_09550) | 1951075..1953135 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| KGB1_RS09560 (KGB1_09555) | 1953139..1953798 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| KGB1_RS09565 (KGB1_09560) | 1953877..1954107 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| KGB1_RS09570 (KGB1_09565) | 1954221..1954595 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| KGB1_RS09575 (KGB1_09570) | 1954599..1955468 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| KGB1_RS09580 (KGB1_09575) | 1955485..1955823 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1955945..1956089 | - | 145 | - | - | Antitoxin |
| - | 1955981..1956083 | + | 103 | - | - | Toxin |
| KGB1_RS09585 (KGB1_09580) | 1956468..1956611 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| KGB1_RS09590 (KGB1_09585) | 1956715..1957683 | - | 969 | WP_163595291.1 | VirK/YbjX family protein | - |
| KGB1_RS09595 (KGB1_09590) | 1957840..1958493 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| KGB1_RS09600 (KGB1_09595) | 1958490..1958681 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KGB1_RS09605 (KGB1_09600) | 1958779..1959018 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KGB1_RS09610 (KGB1_09605) | 1959134..1960567 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T196821 NZ_CP071734:1955981-1956083 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT196821 NZ_CP071734:c1956089-1955945 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
