Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5182500..5182771 | Replicon | chromosome |
| Accession | NZ_CP071711 | ||
| Organism | Escherichia coli strain EC20017429 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5182630..5182733 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5182500..5182771 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JQM62_RS25825 | 5179055..5179717 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JQM62_RS25830 | 5179741..5180397 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JQM62_RS25835 | 5180499..5180729 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JQM62_RS25840 | 5180868..5181242 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| JQM62_RS25845 | 5181246..5182118 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JQM62_RS25850 | 5182131..5182472 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 5182500..5182771 | - | 272 | - | - | Antitoxin |
| - | 5182630..5182733 | + | 104 | - | - | Toxin |
| JQM62_RS25855 | 5182868..5183524 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| JQM62_RS25860 | 5183525..5183716 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JQM62_RS25865 | 5183821..5184057 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JQM62_RS25870 | 5184175..5185614 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196774 NZ_CP071711:5182630-5182733 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT196774 NZ_CP071711:c5182771-5182500 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
