Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2693238..2693383 | Replicon | chromosome |
| Accession | NZ_CP071686 | ||
| Organism | Salmonella sp. SAL-007 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2693240..2693343 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2693238..2693383 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J1G46_RS13150 | 2688438..2688686 | - | 249 | WP_000911593.1 | hypothetical protein | - |
| J1G46_RS13155 | 2688958..2689110 | - | 153 | WP_000248679.1 | hypothetical protein | - |
| J1G46_RS13160 | 2689375..2691354 | - | 1980 | WP_001237395.1 | MBL fold metallo-hydrolase | - |
| J1G46_RS13165 | 2691768..2692046 | + | 279 | WP_001575998.1 | excisionase | - |
| J1G46_RS13170 | 2692021..2693100 | + | 1080 | WP_000087636.1 | tyrosine-type recombinase/integrase | - |
| - | 2693238..2693383 | + | 146 | - | - | Antitoxin |
| - | 2693240..2693343 | - | 104 | - | - | Toxin |
| J1G46_RS13175 | 2693483..2693836 | - | 354 | WP_000722370.1 | YebY family protein | - |
| J1G46_RS13180 | 2693853..2694728 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| J1G46_RS13185 | 2694729..2695103 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| J1G46_RS13190 | 2695241..2695471 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| J1G46_RS13195 | 2695579..2696235 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| J1G46_RS13200 | 2696259..2696957 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2649656..2715253 | 65597 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196659 NZ_CP071686:c2693343-2693240 [Salmonella sp. SAL-007]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT196659 NZ_CP071686:2693238-2693383 [Salmonella sp. SAL-007]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
