Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 516291..516826 Replicon plasmid p1
Accession NZ_CP071613
Organism Rhizobium bangladeshense strain BLR175

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag J2J98_RS23365 Protein ID WP_207603528.1
Coordinates 516551..516826 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag J2J98_RS23360 Protein ID WP_207603275.1
Coordinates 516291..516551 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J2J98_RS23340 511468..511794 + 327 WP_064713213.1 DUF2934 domain-containing protein -
J2J98_RS23345 511799..512218 + 420 WP_138396564.1 HD domain-containing protein -
J2J98_RS23350 512394..514790 + 2397 WP_207603274.1 PAS-domain containing protein -
J2J98_RS23355 515005..516201 - 1197 Protein_479 DUF2264 domain-containing protein -
J2J98_RS23360 516291..516551 + 261 WP_207603275.1 ribbon-helix-helix protein, CopG family Antitoxin
J2J98_RS23365 516551..516826 + 276 WP_207603528.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
J2J98_RS23370 516833..517840 - 1008 WP_207603276.1 substrate-binding domain-containing protein -
J2J98_RS23375 518049..519368 + 1320 WP_207603277.1 alpha-L-fucosidase -
J2J98_RS23380 519417..520640 + 1224 WP_207603278.1 extracellular solute-binding protein -
J2J98_RS23385 520709..521635 + 927 WP_207603279.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - htpB 1..644610 644610


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(6-43)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10929.58 Da        Isoelectric Point: 10.2902

>T196611 WP_207603528.1 NZ_CP071613:516551-516826 [Rhizobium bangladeshense]
MEVKWTRKAVSDIARLYDFLSPVDRRAAARTVQALTAAPARLMEQPRLGERLEEFDPREVRRILVGRYELRYEIQQSTIY
VLRLWHTREDR

Download         Length: 276 bp

>T196611 NZ_CP095180:c1132012-1131794 [Enterobacter roggenkampii]
ATGTCTGATAAACCACTCACAAAAATCGATTATTTGATGCGCTTACGACGTTGTCAGTCAATTGACACCCTCGAACGCGT
GATTGAAAAGAATAAATACGAGCTTTCTGATAATGAACTGGCCGTATTTTATTCAGCCGCTGACCATCGTCTTGCTGAGC
TGACCATGAATAAGTTGTATGACAAAATCCCTACTTCTGTATGGAAATTTGTCCGTTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9743.05 Da        Isoelectric Point: 4.6135

>AT196611 WP_207603275.1 NZ_CP071613:516291-516551 [Rhizobium bangladeshense]
METKVLTAHVPLPLAQKVDQLAMRLERSRGWIIKQALTAWIDQEEERRRLTLEALADVDGGNIVDHQSVQAWADSLDSDE
PISLPR

Download         Length: 261 bp

>AT196611 NZ_CP095180:c1132414-1132040 [Enterobacter roggenkampii]
ATGGACGAGTACTCGCCAAAAAGGCATGATATCGCGCAGTTGAAATTTCTCTGCGAATCCTTGTACCATGACTGCCTTGC
CAACCTTGATGAAAGCAACCATGGCTGGGTAAACGACCCAACGTCTGCCATCAATTTACAGTTGAATGAGCTGATAGAGC
ATATCGCAACCTTCGCACTTAATTATAAAATTAAGTACAATGAAGATAATAAGCTCATTGAGCAAATTGATGAATACCTG
GACGACACCTTTATGTTGTTCAGTAGTTACGGCATTAACGCCCAGGATTTGCAAAAATGGCGTAAATCGGGAAACCGGCT
ATTCCGCTGTTTCGTCAACGTGAGCAGAGCTAACCCGGTTAGCCTTTCCTGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References