Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1933673..1933944 | Replicon | chromosome |
| Accession | NZ_CP071436 | ||
| Organism | Escherichia coli strain EcPNK006 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1933803..1933906 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1933673..1933944 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J1137_RS09145 | 1930228..1930890 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J1137_RS09150 | 1930914..1931570 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| J1137_RS09155 | 1931672..1931902 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J1137_RS09160 | 1932041..1932415 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J1137_RS09165 | 1932419..1933291 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| J1137_RS09170 | 1933304..1933645 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1933673..1933944 | - | 272 | - | - | Antitoxin |
| - | 1933803..1933906 | + | 104 | - | - | Toxin |
| J1137_RS09175 | 1934041..1934697 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| J1137_RS09180 | 1934698..1934889 | - | 192 | WP_001338167.1 | YebW family protein | - |
| J1137_RS09185 | 1934994..1935230 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| J1137_RS09190 | 1935348..1936787 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196340 NZ_CP071436:1933803-1933906 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT196340 NZ_CP071436:c1933944-1933673 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
