Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1815609..1815716 Replicon chromosome
Accession NZ_CP071409
Organism [Pantoea] beijingensis strain JZB2120001

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1815629..1815716 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1815609..1815716 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J1C60_RS08115 1812321..1812980 - 660 WP_128174813.1 exodeoxyribonuclease X -
J1C60_RS08120 1813105..1813335 - 231 WP_128174812.1 DNA polymerase III subunit theta -
J1C60_RS08125 1813569..1813940 + 372 WP_128174810.1 CopC domain-containing protein YobA -
J1C60_RS08130 1813944..1814822 + 879 WP_128174808.1 copper homeostasis membrane protein CopD -
J1C60_RS08135 1814961..1815302 + 342 WP_128174806.1 YebY family protein -
- 1815609..1815716 - 108 - - Antitoxin
- 1815629..1815716 + 88 - - Toxin
J1C60_RS08140 1816025..1816399 + 375 WP_128174805.1 DUF6232 family protein -
J1C60_RS08145 1816841..1817788 + 948 WP_128174803.1 VirK/YbjX family protein -
J1C60_RS08150 1818324..1818716 + 393 WP_128174801.1 ribonuclease inhibitor -
J1C60_RS08155 1818906..1820342 - 1437 WP_128174799.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 88 bp

>T196323 NZ_CP071409:1815629-1815716 [[Pantoea] beijingensis]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTACCAAGAGCCATTCCCCTGGACCGAATACAGGAATCGTATTCGGT
CTTTTTTT

Antitoxin


Download         Length: 108 bp

>AT196323 NZ_CP071409:c1815716-1815609 [[Pantoea] beijingensis]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGGAATGGCTCTTGGTAGAGCCGTGCGCTAAAAGTTGGCATTA
ATGCAGGCGAGGTCGCCATGCCCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References