Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2165285..2165453 | Replicon | chromosome |
| Accession | NZ_CP071393 | ||
| Organism | Klebsiella michiganensis strain Kmfe267 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2165343..2165446 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2165285..2165453 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J1F62_RS10290 | 2160412..2162472 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| J1F62_RS10295 | 2162479..2163138 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| J1F62_RS10300 | 2163217..2163447 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| J1F62_RS10305 | 2163583..2163957 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| J1F62_RS10310 | 2163962..2164831 | + | 870 | WP_207172513.1 | copper homeostasis membrane protein CopD | - |
| J1F62_RS10315 | 2164848..2165186 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2165285..2165453 | - | 169 | - | - | Antitoxin |
| - | 2165343..2165446 | + | 104 | - | - | Toxin |
| J1F62_RS10320 | 2165571..2166530 | - | 960 | WP_207172514.1 | spore coat protein U domain-containing protein | - |
| J1F62_RS10325 | 2166545..2168875 | - | 2331 | WP_207172516.1 | fimbria/pilus outer membrane usher protein | - |
| J1F62_RS10330 | 2168878..2169642 | - | 765 | WP_196545746.1 | fimbria/pilus periplasmic chaperone | - |
| J1F62_RS10335 | 2169661..2170179 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196290 NZ_CP071393:2165343-2165446 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT196290 NZ_CP071393:c2165453-2165285 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
