Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2588105..2588286 | Replicon | chromosome |
| Accession | NZ_CP071383 | ||
| Organism | Leclercia sp. 4-9-1-25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2588118..2588221 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2588105..2588286 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZ655_RS12570 | 2585106..2586548 | + | 1443 | WP_207291954.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JZ655_RS12575 | 2586652..2586891 | + | 240 | WP_040075156.1 | YebV family protein | - |
| JZ655_RS12580 | 2586994..2587185 | + | 192 | WP_040075154.1 | YebW family protein | - |
| JZ655_RS12585 | 2587186..2587830 | - | 645 | WP_207291955.1 | protein-serine/threonine phosphatase | - |
| - | 2588105..2588286 | + | 182 | - | - | Antitoxin |
| - | 2588118..2588221 | - | 104 | - | - | Toxin |
| JZ655_RS12590 | 2588363..2588701 | - | 339 | WP_040075152.1 | YebY family protein | - |
| JZ655_RS12595 | 2588718..2589590 | - | 873 | WP_207291956.1 | copper homeostasis membrane protein CopD | - |
| JZ655_RS12600 | 2589592..2589957 | - | 366 | WP_207291957.1 | CopC domain-containing protein YobA | - |
| JZ655_RS12605 | 2590095..2590325 | + | 231 | WP_040075148.1 | DNA polymerase III subunit theta | - |
| JZ655_RS12610 | 2590650..2591312 | + | 663 | WP_207291958.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196255 NZ_CP071383:c2588221-2588118 [Leclercia sp. 4-9-1-25]
GCAAGGCGACTTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 182 bp
>AT196255 NZ_CP071383:2588105-2588286 [Leclercia sp. 4-9-1-25]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTTAAGTCGCCTTGCACTATAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCATC
AAAAGTGGTCAGAAAAAAAGCG
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTTAAGTCGCCTTGCACTATAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCATC
AAAAGTGGTCAGAAAAAAAGCG
