Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2899344..2899615 | Replicon | chromosome |
| Accession | NZ_CP071375 | ||
| Organism | Escherichia coli strain E105 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2899382..2899485 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2899344..2899615 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0O73_RS14005 | 2896501..2897940 | + | 1440 | WP_053884247.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| J0O73_RS14010 | 2898058..2898294 | + | 237 | WP_096220293.1 | DUF1480 family protein | - |
| J0O73_RS14015 | 2898399..2898590 | + | 192 | WP_001313035.1 | YebW family protein | - |
| J0O73_RS14020 | 2898591..2899247 | - | 657 | WP_089637581.1 | protein-serine/threonine phosphatase | - |
| - | 2899344..2899615 | + | 272 | - | - | Antitoxin |
| - | 2899382..2899485 | - | 104 | - | - | Toxin |
| J0O73_RS14025 | 2899643..2899984 | - | 342 | WP_000976472.1 | YebY family protein | - |
| J0O73_RS14030 | 2899997..2900869 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| J0O73_RS14035 | 2900873..2901247 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J0O73_RS14040 | 2901386..2901616 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J0O73_RS14045 | 2901718..2902374 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| J0O73_RS14050 | 2902398..2903060 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196223 NZ_CP071375:c2899485-2899382 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT196223 NZ_CP071375:2899344-2899615 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
