Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 770719..770864 | Replicon | chromosome |
| Accession | NZ_CP071324 | ||
| Organism | Klebsiella pneumoniae strain JS161205112 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 770726..770828 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 770719..770864 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0G22_RS04875 | 766251..767684 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| J0G22_RS04880 | 767800..768039 | + | 240 | WP_002911393.1 | YebV family protein | - |
| J0G22_RS04885 | 768137..768328 | + | 192 | WP_002911395.1 | YebW family protein | - |
| J0G22_RS04890 | 768325..768978 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| J0G22_RS04895 | 769135..770103 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| J0G22_RS04900 | 770208..770351 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 770719..770864 | + | 146 | - | - | Antitoxin |
| - | 770726..770828 | - | 103 | - | - | Toxin |
| J0G22_RS04905 | 770987..771325 | - | 339 | WP_002911404.1 | YebY family protein | - |
| J0G22_RS04910 | 771342..772211 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| J0G22_RS04915 | 772215..772589 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J0G22_RS04920 | 772702..772932 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J0G22_RS04925 | 773011..773670 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J0G22_RS04930 | 773674..775734 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T196197 NZ_CP071324:c770828-770726 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT196197 NZ_CP071324:770719-770864 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
