Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3027434..3027574 | Replicon | chromosome |
| Accession | NZ_CP071320 | ||
| Organism | Serratia ureilytica strain T6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3027434..3027530 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3027434..3027574 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0X03_RS14135 | 3022939..3024138 | - | 1200 | WP_033642722.1 | trans-2-enoyl-CoA reductase family protein | - |
| J0X03_RS14140 | 3024415..3025191 | + | 777 | WP_157993238.1 | DUF4225 domain-containing protein | - |
| J0X03_RS14145 | 3025191..3025493 | + | 303 | WP_016928136.1 | hypothetical protein | - |
| J0X03_RS14150 | 3025544..3025894 | - | 351 | WP_122017089.1 | DUF4377 domain-containing protein | - |
| J0X03_RS14155 | 3026143..3026487 | + | 345 | WP_033642719.1 | hypothetical protein | - |
| J0X03_RS14160 | 3026562..3026780 | + | 219 | WP_122017095.1 | hypothetical protein | - |
| J0X03_RS14165 | 3026777..3027181 | - | 405 | WP_122017090.1 | hypothetical protein | - |
| - | 3027434..3027530 | - | 97 | - | - | Toxin |
| - | 3027434..3027574 | + | 141 | - | - | Antitoxin |
| J0X03_RS14170 | 3027672..3028013 | - | 342 | WP_016928154.1 | YebY family protein | - |
| J0X03_RS14175 | 3028083..3028964 | - | 882 | WP_072627805.1 | copper homeostasis membrane protein CopD | - |
| J0X03_RS14180 | 3028967..3029383 | - | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| J0X03_RS14185 | 3029677..3030195 | - | 519 | WP_033642716.1 | non-heme ferritin | - |
| J0X03_RS14190 | 3030536..3030766 | + | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| J0X03_RS14195 | 3030798..3031751 | - | 954 | WP_089192588.1 | prolyl aminopeptidase | - |
| J0X03_RS14200 | 3031929..3032354 | - | 426 | WP_160204181.1 | RNA polymerase-binding protein DksA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T196181 NZ_CP071320:c3027530-3027434 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT196181 NZ_CP071320:3027434-3027574 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTATAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTATAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
