Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2065701..2065844 | Replicon | chromosome |
| Accession | NZ_CP071265 | ||
| Organism | Citrobacter freundii strain MEI002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2065736..2065839 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2065701..2065844 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0G25_RS09825 | 2062148..2062810 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| J0G25_RS09830 | 2062834..2063490 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| J0G25_RS09835 | 2063597..2063827 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| J0G25_RS09840 | 2063971..2064345 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| J0G25_RS09845 | 2064349..2065221 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| J0G25_RS09850 | 2065242..2065580 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2065701..2065844 | - | 144 | - | - | Antitoxin |
| - | 2065736..2065839 | + | 104 | - | - | Toxin |
| J0G25_RS09855 | 2065993..2066634 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| J0G25_RS09860 | 2066635..2066826 | - | 192 | WP_003034941.1 | YebW family protein | - |
| J0G25_RS09865 | 2066929..2067165 | - | 237 | WP_029139506.1 | YebV family protein | - |
| J0G25_RS09870 | 2067266..2068654 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196121 NZ_CP071265:2065736-2065839 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT196121 NZ_CP071265:c2065844-2065701 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
