Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 767476..767744 | Replicon | chromosome |
| Accession | NZ_CP071263 | ||
| Organism | Escherichia coli strain MEI003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 767514..767617 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 767476..767744 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0G23_RS03920 | 764633..766072 | + | 1440 | WP_024229232.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| J0G23_RS03925 | 766190..766426 | + | 237 | WP_001295499.1 | YebV family protein | - |
| J0G23_RS03930 | 766531..766722 | + | 192 | WP_001296140.1 | YebW family protein | - |
| J0G23_RS03935 | 766723..767379 | - | 657 | WP_024229231.1 | protein-serine/threonine phosphatase | - |
| - | 767476..767744 | + | 269 | - | - | Antitoxin |
| - | 767514..767617 | - | 104 | - | - | Toxin |
| J0G23_RS03940 | 767774..768115 | - | 342 | WP_000976472.1 | YebY family protein | - |
| J0G23_RS03945 | 768128..769000 | - | 873 | WP_000879329.1 | copper homeostasis membrane protein CopD | - |
| J0G23_RS03950 | 769004..769378 | - | 375 | WP_024229230.1 | CopC domain-containing protein YobA | - |
| J0G23_RS03955 | 769517..769747 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J0G23_RS03960 | 769849..770505 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J0G23_RS03965 | 770529..771191 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 761920..775056 | 13136 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T196084 NZ_CP071263:c767617-767514 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT196084 NZ_CP071263:767476-767744 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAGCTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAGCTGAGGCGGTTTTTT
