Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1903052..1903197 | Replicon | chromosome |
| Accession | NZ_CP071261 | ||
| Organism | Klebsiella pneumoniae strain MEI004 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1903088..1903190 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1903052..1903197 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0G27_RS09350 | 1898182..1900242 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| J0G27_RS09355 | 1900246..1900905 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J0G27_RS09360 | 1900984..1901214 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J0G27_RS09365 | 1901327..1901701 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J0G27_RS09370 | 1901705..1902574 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| J0G27_RS09375 | 1902591..1902929 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1903052..1903197 | - | 146 | - | - | Antitoxin |
| - | 1903088..1903190 | + | 103 | - | - | Toxin |
| J0G27_RS09380 | 1903566..1903709 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| J0G27_RS09385 | 1903814..1904782 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| J0G27_RS09390 | 1904939..1905592 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| J0G27_RS09395 | 1905589..1905780 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J0G27_RS09400 | 1905878..1906117 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J0G27_RS09405 | 1906233..1907666 | - | 1434 | WP_250354919.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T196060 NZ_CP071261:1903088-1903190 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT196060 NZ_CP071261:c1903197-1903052 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
