Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 3787580..3788236 Replicon chromosome
Accession NZ_CP071242
Organism Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S55_jyu2015

Toxin (Protein)


Gene name vapC Uniprot ID A0A379YUY4
Locus tag J0F96_RS18115 Protein ID WP_033639649.1
Coordinates 3787580..3787969 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A379YUX3
Locus tag J0F96_RS18120 Protein ID WP_033639648.1
Coordinates 3787973..3788236 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J0F96_RS18100 3784048..3785478 + 1431 WP_033639650.1 multidrug transporter subunit MdtD -
J0F96_RS18105 3785475..3786857 + 1383 WP_016926705.1 two-component system sensor histidine kinase BaeS -
J0F96_RS18110 3786857..3787573 + 717 WP_004941568.1 two-component system response regulator BaeR -
J0F96_RS18115 3787580..3787969 - 390 WP_033639649.1 type II toxin-antitoxin system VapC family toxin Toxin
J0F96_RS18120 3787973..3788236 - 264 WP_033639648.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
J0F96_RS18125 3788575..3788913 + 339 WP_016926703.1 YegP family protein -
J0F96_RS18130 3789092..3790444 + 1353 WP_028127781.1 tRNA 5-hydroxyuridine modification protein YegQ -
J0F96_RS18135 3790912..3791817 + 906 WP_016926701.1 lipid kinase YegS -
J0F96_RS18140 3791986..3793200 + 1215 WP_033639647.1 D-galactonate dehydratase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-119)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 14324.57 Da        Isoelectric Point: 7.8794

>T195977 WP_033639649.1 NZ_CP071242:c3787969-3787580 [Serratia marcescens subsp. marcescens ATCC 13880]
MYMFDTNTVSHLFRQHPQVLNVMEKLPPSAVCISSVTEAELLYGVAKRRNKALQSMVEAFLAAVTVYAWDSEAARCYGEM
RATMERKGKIMGAIDQLIAAHAQSRGATLVTNDRAFAMVPGLAVEDWTR

Download         Length: 390 bp

>T195977 NZ_CP094987:c4428245-4428138 [Shigella flexneri]
ATGACGCTCGCAGAACTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAATAAGCGGAAGTAA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 10094.37 Da        Isoelectric Point: 4.6702

>AT195977 WP_033639648.1 NZ_CP071242:c3788236-3787973 [Serratia marcescens subsp. marcescens ATCC 13880]
MERIAKLFKNGRNQAVRLPVEFEFDTDRVYIRRDREGNVILSKYPAKPDSWAPLLSIIAQTPVPQEFLGAEDRQQGMADR
DPFSEEE

Download         Length: 264 bp

>AT195977 NZ_CP094987:4428302-4428357 [Shigella flexneri]
TCAAGATTAGCCCCCGTGATGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A379YUY4

Antitoxin

Source ID Structure
AlphaFold DB A0A379YUX3

References