Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 3786305..3786961 Replicon chromosome
Accession NZ_CP071228
Organism Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S78_jyu2015

Toxin (Protein)


Gene name vapC Uniprot ID A0A379YUY4
Locus tag J0F98_RS18105 Protein ID WP_033639649.1
Coordinates 3786305..3786694 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A379YUX3
Locus tag J0F98_RS18110 Protein ID WP_033639648.1
Coordinates 3786698..3786961 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J0F98_RS18090 3782773..3784203 + 1431 WP_033639650.1 multidrug transporter subunit MdtD -
J0F98_RS18095 3784200..3785582 + 1383 WP_016926705.1 two-component system sensor histidine kinase BaeS -
J0F98_RS18100 3785582..3786298 + 717 WP_004941568.1 two-component system response regulator BaeR -
J0F98_RS18105 3786305..3786694 - 390 WP_033639649.1 type II toxin-antitoxin system VapC family toxin Toxin
J0F98_RS18110 3786698..3786961 - 264 WP_033639648.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
J0F98_RS18115 3787300..3787638 + 339 WP_016926703.1 YegP family protein -
J0F98_RS18120 3787817..3789169 + 1353 WP_028127781.1 tRNA 5-hydroxyuridine modification protein YegQ -
J0F98_RS18125 3789637..3790542 + 906 WP_016926701.1 lipid kinase YegS -
J0F98_RS18130 3790711..3791925 + 1215 WP_033639647.1 D-galactonate dehydratase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-119)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 14324.57 Da        Isoelectric Point: 7.8794

>T195865 WP_033639649.1 NZ_CP071228:c3786694-3786305 [Serratia marcescens subsp. marcescens ATCC 13880]
MYMFDTNTVSHLFRQHPQVLNVMEKLPPSAVCISSVTEAELLYGVAKRRNKALQSMVEAFLAAVTVYAWDSEAARCYGEM
RATMERKGKIMGAIDQLIAAHAQSRGATLVTNDRAFAMVPGLAVEDWTR

Download         Length: 390 bp

>T195865 NZ_CP094865:863913-864122 [Staphylococcus epidermidis]
ATGAAATTGAAAAAAGGATTGATAAATGTTTCAGGTATTAAAACAACTGAACAAGCTAAACAGCTCAAAGATCATTTATC
TAAGATGATAGGCATCAATAGTGTGGATATCGATTACCAAATGAATGAGATTCGAGTAGAATTTGACACTCCTGCAAATT
TAAATAACATTGAAAAAGAAATTTACGATTACGGATTTCGTATTTTGTAA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 10094.37 Da        Isoelectric Point: 4.6702

>AT195865 WP_033639648.1 NZ_CP071228:c3786961-3786698 [Serratia marcescens subsp. marcescens ATCC 13880]
MERIAKLFKNGRNQAVRLPVEFEFDTDRVYIRRDREGNVILSKYPAKPDSWAPLLSIIAQTPVPQEFLGAEDRQQGMADR
DPFSEEE

Download         Length: 264 bp

>AT195865 NZ_CP094865:863613-863906 [Staphylococcus epidermidis]
ATGGCAGACATGGAGAGTGCACATCACTCAGAGCAAATAAAAACAAATTTAAAATCAAGATTAAATAGAATAGAAGGTCA
AGTAAGAGCAATAAATCGTATGATTGATGATGACGTTTACTGTGATGATGTACTAACTCAAATTAGAGCAACACGTTCAG
CATTGAATAGTGTAGCTACTAAATTACTAGACCATCACATGAAAGGTTGTATTATGGAAAAAATAAACGACGGTGCGCAA
GAAGAAGCAATGGATGAATTGCTCGTGACATTCCAAAAATTAATAAAAGATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A379YUY4

Antitoxin

Source ID Structure
AlphaFold DB A0A379YUX3

References